Detailed information on CNT30232940


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36450|NDUS2_NICSY, E-value = 3e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499644Ananas comosusCoffea canephora28.8616.6487.93116reverse complement
CNT30483729Ananas comosusChara braunii44.5331.2984.92179forward
CNT30104589Ananas comosusOryza rufipogon52.2448.1798.57210forward

Expression of CNT30232940

Peptides detected in this lncRNA

>peptide 1 (48 aa)
YAGARGREKKLLRRKILGFPMLLHAQRDAPTSGCFTPNPTTVPRRSLT*

>peptide 2 (46 aa)
MPGRGDGKRNCSEERYWGSQCFSTPNEMHQPRDALLLTPRRFRDGA*

>peptide 3 (37 aa)
LCRGEGTGKETAPKKDIGVPNASPRPTRCTNLGMLYS*

Sequence

>CNT30232940
CTATGCCGGGGCGAGGGGACGGGAAAAGAAACTGCTCCGAAGAAAGATATTGGGGTTCCCAATGCTTCTCCACGCCCAACGAGATGCACCAACCTCGGGA
TGCTTTACTCCTAACCCCACGACGGTTCCGAGACGGAGCTTAACCTGAGTCTCGGTTAAGAACGCGATGATCTACGTTTCACACGGTGCACGATTCCATG
GATAATTTCATTCGAGATCGTGATAGAGGACATAGCTTACGATCATCGGCTTTGATCATGCCACTAGGCATTTGATTAGGACATTGCACAATGATCCGAA
CACTTTGTCGCATCTCTTCGATACGGATACAGTAACGATCATAGCGATCTCCTCTGGTACCTACTGGTACGTCAGGATCCGATTGGTCATGAACATCGTA
AN