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Detailed information on CNT30232528


BLAST search results

BLAST vs Swiss-Prot:
sp|A9L997|YCF3_LEMMI, E-value = 4e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Ananas comosusOryza sativa50.2817.8887.74995forward
CNT30618958Ananas comosusSesamum indicum51.5918.3286.191021forward
CNT3020650Ananas comosusCitrullus lanatus22.4425.5292.57444forward
CNT30730408Ananas comosusCorchorus capsularis22.4493.8791.44444forward
CNT30632355Ananas comosusVigna unguiculata16.1736.8790.94320forward
CNT30201085Ananas comosusPisum sativum22.4421.9891.22444forward
CNT3047566Ananas comosusPrunus dulcis46.1347.3385.43913forward
CNT3094383Ananas comosusSolanum tuberosum5.8653.9588.79116reverse complement
CNT30194121Ananas comosusSecale cereale38.6685.4790.33765forward
CNT30390237Ananas comosusTriticum turgidum43.5639.8987.12862forward
CNT30588877Ananas comosusMusa acuminata13.6498.994.07270reverse complement
CNT30510815Ananas comosusSolanum lycopersicum12.1350.3188.75240forward
CNT30556045Ananas comosusOryza glaberrima50.2830.4887.74995forward
CNT30171250Ananas comosusTrifolium pratense5.127.6793.07101forward
CNT30245953Ananas comosusAvena sativa4.4533.0893.1888reverse complement
CNT30598583Ananas comosusFraxinus excelsior13.7427.3187.5272forward
CNT30445979Ananas comosusSaccharum spontaneum19.2596.9595.8381forward
CNT3017916Ananas comosusZea mays50.2848.2589.15995forward
CNT30606803Ananas comosusGossypium raimondii8.9462.5492.09177forward
CNT30217417Ananas comosusKalanchoe fedtschenkoi19.3581.8489.3383forward
CNT30655373Ananas comosusRosa chinensis22.1310.4692.69438forward
CNT30627898Ananas comosusDaucus carota23.2914.9893.06461forward
CNT30351181Ananas comosusEragrostis tef6.4725.3589.06128forward
CNT30595954Ananas comosusOryza meridionalis26.8340.4491.53531forward
CNT30360010Ananas comosusLactuca sativa11.7721.6991.42233forward
CNT30430934Ananas comosusPapaver somniferum50.5815.3287.711001forward
CNT3057361Ananas comosusAmborella trichopoda45.9318.0786.58909forward
CNT3022800Ananas comosusPopulus trichocarpa17.1810092.06340forward
CNT30332506Ananas comosusDioscorea rotundata37.2480.986.97737forward
CNT30149145Ananas comosusBrachypodium distachyon41.1345.3288.82814forward
CNT30103542Ananas comosusOryza rufipogon19.153.3195.77378forward
CNT30116311Ananas comosusOryza nivara17.3391.4783.97343forward
CNT30604206Ananas comosusOryza punctata9.9549.595.43197forward
CNT30550879Ananas comosusOryza brachyantha9.3546.1387.03185reverse complement
CNT30114189Ananas comosusFicus carica23.2411.6890460forward

Expression of CNT30232528

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MRYRTKYNAEGRDIMKFLIRSSHRNDLFYLIDGSNNQTHFFFNSLKKGVVLFEALRDFQPIMCFNIITWSKRYSLFPILSSLIGPSFRNFRITL*

>peptide 2 (48 aa)
KSSSFRTTHTKRPANSQVFSEPLKNRYFIYDYSLSFLSPIHLFYLVIH*

>peptide 3 (33 aa)
MLSIACVYKAYVIEYITSIIGINFWSRSFIIIL*

>peptide 4 (32 aa)
MVIRVSKVQTRWMFVVPTILVSPDTDKEKGNL*

Sequence

>CNT30232528
TAAGTCCTCCTCTTTCCGGACAACACATACAAAGAGACCCGCCAACAGTCAAGTTTTTAGTGAACCTCTGAAAAATAGATATTTTATTTATGATTATTCC
CTTTCTTTCCTATCTCCCATCCATCTATTTTATTTAGTTATTCACTAGAGCAATTATGATATTGAAGTCGATCCGAGGCAAGTGTTCGGATCTATTATGA
CATAACGATTAGGTGCCCAACGGACCCTTTTACCTTGGAAAATCCTTTCCTGGCGTGACGAAAAAACTATTTTTTTGCGCAACCTAAACCTAGTGTATTT
ATATCTGAATGAAGGTATAAATACCTATATGGAGCTACTTCCATGGAACATAATATCTTATTACTTTATTACAAATCGCAAGATCATTCATTAGAATTAA
TAAGATAAAATCATTCCGATATCTTATCTATATTTAGTATTTTTTATTAGCTTTACTTTATTAGTTCTATTCTATACTGTATCCATATCATTTATCCCTA
TGAGATACCGTACAAAATATAATGCAGAAGGAAGGGATATAATGAAATTCTTGATTAGATCTTCTCATAGGAACGATCTATTTTATTTGATTGATGGATC
CAACAACCAAACCCATTTTTTTTTTAATTCATTAAAAAAGGGAGTGGTTTTATTCGAAGCGCTTCGTGATTTTCAACCAATTATGTGCTTCAATATAATT
ACCTGGAGTAAGCGCTATAGCTTGTTTCCAATACTCAGCAGCTTGATCGGACCAAGCTTCCGCAATTTCAGAATCACCCTGTAGAATGGCCTATAGTCGC
ACGTAATGACAGATCACGGCCATATTATTAAAAGCTTGTGGTAAGAATGGGTTTCGTTCTAGTGCCCGGAAATAATATTCCAAAGCCTTTGTATGCTCTC
CATTGCTTGTGTGTATAAGGCCTATGTTATAGAGTATATAACTTCGATCATAGGGATCAATTTCTGGTCGCGTAGCTTCATAATAATTCTGTAAAGCTTC
CGCATAATTTCCTTCGGATTGAGCCAACATCCGTTACGGTCGTTCATTCTATTCAGAAAATCTCCGTTCCAGAACCGTACATGAGATTTTCATCTCATAC
GGCTCCTCCCTTCTGCGCATAGTCCTAAGGGGAATAATCCATAGAATAAAAATTGAACTATTCTCATCTCATTATGAACTGAAAGGAACTAGTATTTTTA
CAAGAAATCTCTAGCCAGCCTTCCCGCAAGAGGTTTTTTCTTAACACCAATCATATTAGTGTTAGATATAAATGGTAACTCCAACAATTTCTTTGTTCTC
AACGCCTTCTATTTCCAGGAATTAGTCACTTCAACGATCTTTGATGGTTATACGGGTATCCAAAGTACAAACGAGATGGATGTTTGTTGTCCCAACCATT
CTTGTTAGTCCCGATACCGATAAGGAAAAGGGGAATTTATAACAAAGTTTTTGTGTTGTTGATTCCTAGGTGTAGTGCTTTTTCCCTTATGCCGCCTATT
GGTACTAATGTAGTGTAGGATTGACCCGCAATACAGAACCCATAGGTGTAACCTTTCGCTCAATACTCAAATCAACAATTGAAACATCTGAGGCTGCATC
AATCGAGGATACACGATAGAAGGAATTGTTCTATCTCCAAACTTCACCTTCACCGAGCGTAGGTTTATTTCAAGAATTTCGTTCTTTCTATACCGAACCG
CGTCTCTTTCTCGTAAGACTGAGGTGAGGGCTAAAAAAAACAAGAAAAAAGAATCAAATCGCACCATCTCTGTAATAGGTAAATGCCTTTTTTTCTCCTG
AAGTTGTCGGAATTATTCGTAATAAGATATTGGCTACAATTGAAGAGGTCTTATCAATAAAATTTCCATTTATACGAGATCTAGGCATAATTAGCAATCC
ATTCTAGAATTCTTTTCATTACCCCTCGGGGAAAATTATCCCACAAACAAAGCAAAGGAATTATACAGTACGAAATAAC