Detailed information on CNT30232496


BLAST search results

BLAST vs Swiss-Prot:
sp|A6MMU2|RR14_ILLOL, E-value = 3e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526965Ananas comosusEucalyptus grandis22.7762.7989.63135reverse complement
CNT30560220Ananas comosusActinidia chinensis5721.7489.94338forward
CNT30207127Ananas comosusHelianthus annuus46.2191.6486.5274forward
CNT30683954Ananas comosusTriticum urartu63.2413.4283.2375forward
CNT3051926Ananas comosusAmborella trichopoda71.3329.8185.82423forward
CNT30578211Ananas comosusOryza barthii48.947.3986.9290forward
CNT30585620Ananas comosusEchinochloa crusgalli58.356.7486.13346forward

Expression of CNT30232496

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKLCLFFLLRIGESNDISVPNFSACSPSESNFFLP*

>peptide 2 (30 aa)
MGEERLDTPLYHIYTNRIVHLYRMVKRALL*

>peptide 3 (35 aa)
MIFLFQIFPLVLPLNQTFSCHNVQFLLLSMIQFGS*

Sequence

>CNT30232496
ACTAGGAACTAATGGGCGAAGAAAGATTGGATACGCCCCTCTACCATATCTATACAAATAGAATAGTCCATTTATACAGAATGGTAAAGAGGGCCCTTCT
ATGATCATAGATCATAGAGATCTATACAAATATGAAACGATATTTTTATCCTTACCAACTTGATCTTGTTGCGCCCGGTAACAAACATGCATAAACCATT
TCTCGAAGTATGTGTCCGGATAGGCCAAAGTCTCGATAGTTAGCTCTAGGTCTTCCAGTCAAAAAACAACGTCGATGAAGACGTATAGGTGCACTATTAC
GTGGTGGGGATTGCAATTTTCCATGAATTTCCCATTTTTCACTCAACGATGAAACTTTGCTTATTTTTTCTTTTGAGGATCGGCGAATCAAATGATATTT
CTGTTCCAAATTTTTCCGCTTGTTCTCCCTCTGAATCAAACTTTTTCTTGCCATAATGTTCAGTTCCTATTATTATCAATGATACAGTTCGGATCCTAGA
TGTAAAAATATAAGAAGGCGTATCCTCCCCCTCCATCGAAACAAATGAAATTGTTGCTGATACAGTACATAAAAAAACAATAAATAACTAAAT