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Detailed information on CNT3023247


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39613|CYPH_CATRO, E-value = 1e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640933Populus trichocarpaNymphaea colorata31.2726.4778.71202forward
CNT30518775Populus trichocarpaJuglans regia34.6714.4680.8224forward
CNT30702610Populus trichocarpaQuercus lobata44.4354.9880.84287forward
CNT30201798Populus trichocarpaPisum sativum27.0975.1180175forward
CNT30710775Populus trichocarpaGlycine max44.2750.8980.07286forward
CNT30145071Populus trichocarpaMedicago truncatula18.5825.8186.67120forward
CNT3075586Populus trichocarpaBrassica juncea17.9621.9383.62116forward
CNT30429993Populus trichocarpaPapaver somniferum34.8322.3282.22225forward

Expression of CNT3023247

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MFPVKPFGLNSADKELRSISPRTGISHGKHTRSSVLLHEVLIGKLSPID*

Sequence

>CNT3023247
AAAGGCCCCATATAAAACCTCAAAAACTAAAGGACTAAAACGCACCCAAAACTACTAGAGAAGACCCAATAATAAAAAGACGAAACAAAGACACCACCGA
ACGACATGTCAACCAAGGGACTCTAAGAGAGTTGACCACAGTCAGCAACAACAACAGGCTTCGAAGTCCTGCCATTTCCAGATCCAACCTTCTCAATTGC
CTTCACCACGTCCATCCCTTCAACAACCTGGCCGAAAACGACATGTTTCCCGTCAAGCCATTCGGTCTTAACAGTGCAGACAAAGAACTGAGATCCATTA
GTCCCAGGACCGGCATTAGCCATGGAAAGCACACCAGGTCCAGTGTGCTTCTTCACGAAGTTCTCATCGGCAAACTTAGCCCCATAGATTGATTCACCGC
CGGTGCCGGATCACACGGTGAAAGCTTGAACCTTTGAAGTGAAGTGGCTTGCCGGACTTGCCAACACCTTTCTCACCGGTGCAAAGAGCACGGAAATTCT
CGGCTGTCCTTGGAACAATATCGGCGAACAGCTCCATAACGATCCGACCAACAGATTGGCCGCCGACGGTCATGTCAAAGAATACCTTAGGATTTGACAT
TGTAAAGGAGAGAGATTAGGGATTTGATTTCCGAGAAGGATTAAAC