Detailed information on CNT30232463


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1KXP9|YCF15_HELAN, E-value = 9e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690834Ananas comosusOryza sativa51.6913.6295.08122forward
CNT30730658Ananas comosusCorchorus capsularis49.1514.7894.83116reverse complement
CNT30502643Ananas comosusNicotiana attenuata36.026.5691.7685reverse complement
CNT30191576Ananas comosusSecale cereale49.1529.5989.66116forward
CNT30297822Ananas comosusTriticum aestivum49.1528.1689.66116forward
CNT3082974Ananas comosusBrassica juncea49.5813.7692.31117forward
CNT3017923Ananas comosusZea mays43.6436.7989.32103reverse complement
CNT30610477Ananas comosusGossypium raimondii49.1517.1193.97116reverse complement
CNT30356763Ananas comosusLactuca sativa49.1521.494.83116forward
CNT3056176Ananas comosusAmborella trichopoda41.952.1387.8899reverse complement
CNT30319059Ananas comosusAsparagus officinalis49.1514.2797.41116reverse complement
CNT30150789Ananas comosusBrachypodium distachyon29.668.4798.5770reverse complement
CNT30578031Ananas comosusOryza barthii51.6923.1592.62122forward
CNT30550344Ananas comosusOryza brachyantha28.3928.5198.5167forward
CNT30114021Ananas comosusFicus carica258.3888.1459forward

Expression of CNT30232463

Peptides detected in this lncRNA

>peptide 1 (47 aa)
HGTTLFPLSPPSPRSTEKKCRTGANSSSRKKGLTEPGSLTRYPFNTT*

Sequence

>CNT30232463
TCATGGTACAACCCTCTTCCCGCTGAGCCCCCCTTCTCCTCGGTCCACAGAGAAAAAATGTAGGACTGGTGCCAACAGTTCATCACGGAAGAAAGGACTC
ACAGAGCCGGGATCGCTAACTAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGACGACTCACCAAAGCACGAAAGCCAGGATCTTTCAT
CAAATTGATTCCTATTTGAAGAGTGCATAACCGCAT