Detailed information on CNT30232303


BLAST search results

BLAST vs Swiss-Prot:
sp|P37220|ASR3_SOLLC, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371376Ananas comosusOryza glumipatula19.5623.6183.48115reverse complement

Expression of CNT30232303

Peptides detected in this lncRNA

>peptide 1 (34 aa)
WLRKRNHHFPFPHKERTQQGEVYLTKKEEGAQAQ*

>peptide 2 (80 aa)
MKRKRRSTSTRSILGEFGPCRRCLRLCMQHEKHKAKKDPEHAHHHKLEEEIAATVAVGAAGFAFHEHHEKKDAHKHQNYE*

>peptide 3 (89 aa)
MAEEKKSPLPLSTQGENPTGGGVLNEEGGRSTSTMSHRDELAPSPPAFAMYERHEEKKDPEQAHKHKIEQEVAEAVAVGGAVTCSCTFS*

>peptide 4 (50 aa)
MRSIRQRRTPSTRTTTSSRRRSPPRLRSAPRASLSMSTMKKKMHTSTRIMS

>peptide 5 (54 aa)
MAQEKEKHHFHLFQHKEEDSSEVDYEKEEKEHKHKEHSWRVWSLPPVPSPVHAA*

Sequence

>CNT30232303
ATGGCTGAGGAAAAGAAATCACCACTTCCCCTTTCCACACAAGGAGAGAACCCAACAGGGGGAGGTGTACTTAACGAAGAAGGAGGAAGGAGCACAAGCA
CAATGAGTCACCGCGACGAGCTTGCGCCGTCGCCGCCTGCCTTCGCCATGTACGAAAGGCACGAGGAGAAGAAAGATCCGGAGCAGGCCCACAAGCATAA
GATCGAGCAGGAGGTCGCCGAAGCGGTCGCCGTCGGCGGCGCCGTTACTTGTTCTTGTACATTTAGTTAACAATGGCTCAGGAGAAAGAGAAGCACCACT
TCCACTTGTTCCAACACAAGGAGGAGGATTCATCTGAGGTTGACTATGAAAAGGAAGAGAAGGAGCACAAGCACAAGGAGCATTCTTGGCGAGTTTGGTC
CCTGCCGCCGGTGCCTTCGCCTGTGCATGCAGCATGAGAAGCATAAGGCAAAGAAGGACCCCGAGCACGCGCACCACCACAAGCTCGAGGAGGAGATCGC
CGCCACGGTTGCGGTCGGCGCCGCGGGCTTCGCTTTCCATGAGCACCATGAAAAAAAAGATGCACACAAGCACCAGAATTATGAGTGA