Detailed information on CNT30232050


BLAST search results

BLAST vs Swiss-Prot:
sp|O22647|RS16_FRIAG, E-value = 2e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697810Ananas comosusOryza sativa28.857.8585.67328forward
CNT30515426Ananas comosusJuglans regia22.1219.1882.94252forward
CNT3043803Ananas comosusPrunus dulcis12.226.5383.45139forward
CNT30295032Ananas comosusTriticum aestivum18.2639.8585.58208forward
CNT30391876Ananas comosusTriticum turgidum11.8560.2782.22135forward
CNT30568235Ananas comosusActinidia chinensis18.6170.988.68212forward
CNT3083687Ananas comosusVigna radiata22.1226.581.35252forward
CNT30555564Ananas comosusOryza glaberrima22.5658.0184.05257forward
CNT30247768Ananas comosusAvena sativa13.1724.6780.67150forward
CNT30472632Ananas comosusSaccharum spontaneum21.65.0380.89246forward
CNT30721366Ananas comosusTriticum spelta11.8526.2681.48135forward
CNT30365247Ananas comosusSorghum bicolor28.9748.682.73330forward
CNT30120766Ananas comosusCitrus clementina15.0131.6180.12171forward
CNT30151313Ananas comosusBrachypodium distachyon13.9633.5493.08159forward
CNT30104226Ananas comosusOryza rufipogon22.5653.7783.27257forward
CNT30118078Ananas comosusOryza nivara28.852.2385.67328forward
CNT30176592Ananas comosusVigna angularis22.1230.9282.14252forward

Expression of CNT30232050

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVRKAPKLKTKKRISHKFDPSEKTSKSNERISPILQTTSHL*

>peptide 2 (67 aa)
MRMSTPAKRERPRRRIGSNALYRRISGFTSSIGLPFTLISPRPGLQCVTATAVFLRPKHCTDWADAAP

>peptide 3 (97 aa)
MREEERSVISSNGTTSGSGRGRRDRRTSWARSGGGRRRGPWRCSGGWRRSARSCRRRGRVCACRRRRSGSGRGGGSARTPCTGGSPASPARSGSRSP*

Sequence

>CNT30232050
CATACTTAAAATCCAACATACCATTGGAATATTCATCATCAGAATAACATTCAACTGATAAATAGCCTTACATAACCATCATCAGGTCTAAATAATTAAG
CAAGCATCAAAGCAGTAAACTAGATTTCACCAAAAACCCTAATGGTAAGAAAAGCTCCAAAATTAAAAACGAAAAAGCGCATCTCTCACAAATTTGATCC
ATCTGAGAAGACAAGTAAAAGCAACGAACGGATCTCCCCAATCCTGCAAACAACATCACACTTATAAATCACCTTAACATTACCAGGTCATCCAAATATC
ACCACAAAACACATATTCCACAAACAAAAGAGCAAATTGAGTTAAGTATCCTCATACTTAAATCAATTTGACATACTAACCATGTCCAATTAATTAAGAA
AGCAATTCAAAACAGTAAACTAGATCCCACCAAAACTCTAATAGCAATTAAAACTCCAAAATTAAACATCGCAGATGACAAATCCGATCCATCCCAGAAA
ACAAGTAAAAGACTAAACCGATCCTGCAAAGGAAACATCATATTCAATAACGAAACAGTAAATTCATTAAAGTATCACATACTTAAATAAATCCAACACA
TTACTTAAGAAACCAATCCAAAGCAGCGAACTAGGTCCGACCAAAACCCTAAGAGCAATTAAAACTCCAAATTTTAACGCGAACAACAAAAGAAAGAAAA
AAAAACACATCTTTGACTAATGCAGAGCACGAACCGACCCCGATCGCTCCTCCGATGCGAGAAGAGGAGAGGAGTGTGATCTCCTCTAACGGTACGACTT
CTGGAAGCGGGCGCGGGCGCCGCGACCGCCGAACTTCTTGGGCTCGCAGCGGCGGGGGTCGGCGACGAGGGCCTTGGCGATGCTCTGGCGGATGGCGTAG
ATCTGCGAGGTCTTGCCGCCGCCGCGGACGCGTATGCGCATGTCGACGCCGGCGAAGCGGGAGCGGCCGAGGAGGAGGATCGGCTCGAACGCCTTGTACC
GGAGGATCTCCGGCTTCACCAGCTCGATCGGGCTCCCGTTCACCTTGATCAGCCCGCGCCCCGGCTTGCAGTGCGTCACCGCCACCGCGGTTTTCTTGCG
GCCAAAGCACTGCACCGACTGGGCCGATGCAGCCCCGGT