« Back to Ananas comosus search


Detailed information on CNT30231964


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530404Ananas comosusEucalyptus grandis14.148.4585.47172forward
CNT30316147Ananas comosusCorylus avellana15.3325.182.35187forward
CNT30700549Ananas comosusQuercus lobata14.5144.8182.49177forward
CNT30499549Ananas comosusCoffea canephora15.1637.7678.92185forward
CNT30727603Ananas comosusCorchorus capsularis13.8534.2181.66169forward
CNT3068683Ananas comosusQuercus suber14.7536.5982.22180forward
CNT30504948Ananas comosusNicotiana attenuata14.5142.1480.79177forward
CNT3098150Ananas comosusSolanum tuberosum14.5936.3380.34178forward
CNT30289293Ananas comosusTriticum aestivum5.9824.0189.0473forward
CNT30223417Ananas comosusHordeum vulgare11.3961.2383.45139forward
CNT30539234Ananas comosusBrassica napus15.7420.9881.77192forward
CNT30511842Ananas comosusSolanum lycopersicum14.5138.6581.36177forward
CNT30145616Ananas comosusMedicago truncatula14.5138.9983.05177forward
CNT30261302Ananas comosusBrassica rapa15.3336.1782.89187forward
CNT30457070Ananas comosusSaccharum spontaneum14.2625.5583.33174forward
CNT30131528Ananas comosusLolium perenne15.2540.3586.02186forward
CNT30718631Ananas comosusMalus domestica golden14.1830.1482.08173forward
CNT30343308Ananas comosusEragrostis tef7.2132.1285.2388forward
CNT30570592Ananas comosusVitis vinifera12.9548.9284.81158forward
CNT3055709Ananas comosusAmborella trichopoda13.9325.9981.76170forward
CNT30105598Ananas comosusOryza longistaminata15.4127.2983.51188forward
CNT30319856Ananas comosusAsparagus officinalis6.5628.5786.2580forward
CNT30574680Ananas comosusOryza barthii15.4120.5282.45188forward
CNT30580197Ananas comosusEchinochloa crusgalli15.3322.6981.82187forward
CNT30499107Ananas comosusDigitaria exilis14.9246.5580.77182forward
CNT30604168Ananas comosusOryza punctata13.9361.5986.47170forward
CNT30550386Ananas comosusOryza brachyantha11.3950.5584.89139forward
CNT30337932Ananas comosusCynara cardunculus15.4923.0583.07189forward

Expression of CNT30231964

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MDQVYHVGDKSQCPTERVEISEVLTWWTRSKEQIFFSFRCDTPGTGRKSQVPDLFVSLRMIFGNADPPKD*

>peptide 2 (91 aa)
MLEGITIDLTCARKEEPCAHPFSQSQHVESAHHIGYDGLNGIELVVDGGGRRGGGARRGGTAPSARAMGAASRASASTPSSPPAPPRDRGR*

>peptide 3 (62 aa)
MSSEPAMVPTPSQEEGEEEEEEEEGPKRKVFRILSGASLRNGKLAGGFVQKGEIPAEMVENK*

Sequence

>CNT30231964
CACCGCCACGTGTCGGCATTAGATACGCTCGAAGGACGCTGCTAACAAGCGTACGGTGTTCTTAACCCCCCGAACGTTGAAGGGGGGGGACCGTGTTGAA
AATTTCCTATTGTTGAAGGGTCTCCATACAACTTTACCCCCGTAGGTTTACGGGTTCAATCTCAAACTTAATGAACGAACTTTTCGATGGACCAGGTCTA
CCACGTCGGGGACAAAAGTCAATGCCCTACTGAGAGAGTTGAGATAAGTGAGGTGCTGACGTGGTGGACCCGGTCCAAAGAGCAAATTTTTTTCAGTTTC
AGATGCGACACACCGGGAACGGGTCGTAAGTCCCAAGTACCGGATCTTTTTGTTTCTTTGCGCATGATATTCGGCAACGCAGATCCCCCCAAAGACTAAA
ATTTTAACAGTAATTTGTCCCATCCCATGGCATTTAATTCTCAACCACCGAGCTGTTTTCCTTGTCCTAGATTCCTAACTCCGTATCAACATCTTTCCTG
AGCTGCATCTCTAAAATTTTCTTAATTATGTAAGAAGTTAAATCCTCCTCAATTCCTATCTGATCTATCAACTCAAGGTGTCTTTCATATTTATCATATA
CGTGAAAATATTAATGTATATATAAATTTATTTTTAGCAAATTAATATTTATCAAATTAGAAAAAAAAGATCTTTTAGGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGTATACCAATGGGATTAACATTTCCCCAGTAGGTCTCAACCTGGGGATGTTGGAGGGGATCACCATAGACCTCACTTGTGCTCGTAAGGAGGAA
CCGTGCGCCCACCCTTTTAGCCAATCCCAGCATGTTGAGAGTGCCCACCACATTGGATATGATGGTCTTAACGGGATTGAACTTGTAGTGGACGGGGGAG
GGCGAAGAGGAGGCGGTGCTCGCCGAGGAGGTACCGCGCCGAGCGCGAGAGCCATGGGAGCCGCTTCGAGGGCTTCGGCGAGTACCCCGTCGTCTCCGCC
GGCGCCGCCTCGTGACCGCGGTAGATGAGCTCCGAACCCGCCATGGTCCCGACCCCCTCTCAGGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGGAC
CTAAACGCAAAGTTTTTCGAATCCTTTCAGGGGCCTCTTTGCGAAATGGGAAACTCGCAGGTGGTTTCGTGCAAAAAGGGGAGATTCCTGCGGAGATGGT
GGAGAATAAGTAAGCATAAG