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Detailed information on CNT3023179


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515949Populus trichocarpaJuglans regia20.915.7783.96106forward
CNT30727466Populus trichocarpaCorchorus capsularis21.8919.8684.68111forward

Expression of CNT3023179

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKKREEGGWIYTEKEMGGSKWEGKGGVDGQRWI*

>peptide 2 (81 aa)
CLATTELTCGSIVGTCSFLRRVESAKPNPALLTRVSYLGSVPSPRPLSHSSKMHFLASSTTTNNSASASFNGGRLLSRRHN*

>peptide 3 (51 aa)
LPCNHGTHVRQYRRHVQLPPPCRKCQAKPGSSYSGLLSRQRTFPTASFSLL*

Sequence

>CNT3023179
TTTGCCTTGCAACCACGGAACTCACGTGCGGCAGTATCGTAGGCACGTGCAGCTTCCTCCGCCGTGTCGAAAGTGCCAAGCCAAACCCGGCTCTTCTTAC
TCGGGTCTCTTATCTCGGCAGCGTACCTTCCCCACGGCCTCTTTCTCACTCCTCTAAAATGCACTTCCTTGCCTCCTCCACCACCACCAACAATTCCGCC
TCCGCTAGCTTTAACGGCGGCCGTCTTCTCTCTAGGCGCCATAATTAAAGAAAAAAACTTCTTGTAGCTTTTACTTTTTGAAAAAGGAAGCGAGCATGAA
AAAGAGAGAGGAGGGGGGGTGGATTTATACAGAGAAGGAGATGGGGGGGAGTAAATGGGAAGGCAAGGGGGGCGTGGACGGTCAACGATGGATTTGACTG
TGAGAGCTGGGGCGGCTATAGATTAGCTAGAAGAGTGTGGGTAAAGAAGAATAATAAAGTGGTGTCCGAATTATATGGCATGTGGGATGACTAGAGAGCA
AGACCGT