CANTATAdb - search

Detailed information on CNT30231742

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30137691	Ananas comosus	Lolium perenne	13.27	26.62	90.24	82	reverse complement
CNT30367305	Ananas comosus	Sorghum bicolor	13.27	20.81	90.24	82	forward
CNT30331361	Ananas comosus	Dioscorea rotundata	12.94	28.88	86.25	80	forward

Expression of CNT30231742

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MAKRMGFVVCCGERGGGEGMGIYGRTYGGGRYDERGRGWDTLAYPVRDPKNDTF

>peptide 2 (31 aa)
MGERMEEDDTTREGEVGILLHILCGIPKTTLF

Sequence

>CNT30231742
GTGGGGACCCTCTTAATCGTCAACATCTTCGTCGATCTCGTATATACGCACGCAGAGGGGGAGCTTAGGGCTAGGGTTTGAAGGAGGGGGTTGGGGGGGA
GGGGGGGATCAGGAGGAGGAGAAGGGGAGGAGGGTGGCGAGCGCTAAGCAGGCGCCGCCGCCGGCGAGGAAGAGGAGGTCGGAGGGGCTACCACCGGCCG
AGGGGAGAGCGCCGCGGCCGCCGTGCGGGGCGGGGCAGCGCGCCCCGTCGAGGAGGAGGGGAGTAGGGATGGTCTCCACTTGATTCGCCGTGCGCGGGCG
GTGGATCACCCACCGTCCGTGGCCAAGGTGAGCCGTGATTGCGCCCAACTCGGTCTCCTCCCGTTTAGGGTTTCTGCTCGAGGACGAAGACGCCGAAGCC
GAAGCTCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCCAACAATGGCGAAGAGGATGGGGTTTGTGGTGTGTTGTGGGGAGCGAGGT
GGAGGGGAGGGGATGGGGATTTATGGGAGAACGTATGGAGGAGGACGATACGACGAGAGAGGGAGAGGTTGGGATACTCTTGCATATCCTGTGCGGGATC
CCAAAAACGACACTTTTT