Detailed information on CNT30231730


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501325Ananas comosusCoffea canephora51.086.1492.96142forward
CNT30618776Ananas comosusSesamum indicum506.7391.37139forward
CNT30401845Ananas comosusBeta vulgaris20.148.1591.0756forward
CNT30255597Ananas comosusAvena sativa51.816.4997.92144reverse complement
CNT30627396Ananas comosusDaucus carota52.1634.5293.79145forward
CNT30679583Ananas comosusTriticum urartu51.83.09100144forward
CNT3035046Ananas comosusCucumis melo59.356.3786.06165reverse complement
CNT30577701Ananas comosusOryza barthii51.819.5799.31144forward

Expression of CNT30231730

Peptides detected in this lncRNA

>peptide 1 (42 aa)
QFRTAAESSDLSTSGIRGISVFELRWGKSTKARQIDRLLSRC*

>peptide 2 (35 aa)
VNSALLLSRRTYPPQGFVEFPFLNCVGGNLPKLGR*

Sequence

>CNT30231730
GTCAATTCCGCACTGCTGCTGAGTCGTCGGACTTATCCACCTCAGGGATTCGTGGAATTTCCGTTTTTGAATTGCGTTGGGGGAAATCTACCAAAGCTAG
GCAGATAGATAGACTCCTTTCCCGCTGCTAAGGGAGAGCAAGAAAAAATATAAAATTCTTGTTTTTTTCACCAGCGCCCTCTGAAGTCAAAGTCAGGGTT
ACATCGAGTGAGAAAGCAGCATTTTCAAAATGAAAAGTAGGGCTTGAGGGCATTTCGAGTAATTTGATAACTTATTTC