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Detailed information on CNT3023130


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-151

BLAST vs NONCODE:
NONTPRT002153, E-value = 8e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380449Populus trichocarpaManihot esculenta72.3869.8781.87684forward

Expression of CNT3023130

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSLLSTSRVMVFPVKVLTNICIPPRRRRTRWRVLSF*

>peptide 2 (37 aa)
MVSLLSTSSVIVFPVKVFTKICIPPRRRRTRWRVLSF*

>peptide 3 (38 aa)
MVSLLSTSRVIVLPVKVFTKICIFFFLDLIGRTEKSEL*

Sequence

>CNT3023130
TCTTTCTTAATTACTTGCAAACTTTGAATCATTAGAGATATCCTCGAGCATTAAACCATACAGCATAACATCTTAATCTTTATTTGATGATGGTAAAACA
ACATCCATAGGGCCTCACATGGGCTAACCACACACAACATTTTGGAAACCAGAAACCATAAACAGAGCAAGAAAGCCTTCAGAAGCCACCACGGAGACGC
AAGACAAGGTGAAGGGTAGACTCTTTCTGGATATTATAATCCGCCAAGGTTCTTCCATCCTCCAACTGCTTCCCGGCAAAGATCAGACGCTGTTGATCCG
GTGGGATTCCCTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTAATCGTCTTCCCTGTCAAGGTCTTCAC
AAAAATCTGCATACCCCCTCGGAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATATTATAATCGGCCAAAGTCCGACCATCTTCGAGCTGTTTC
CCGGCAAATATCAAACGTTGTTGATCCGGTGGGATGCCCTCCTTATCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCAAGGG
TTATGGTCTTCCCTGTCAAGGTCTTAACAAATATCTGCATACCTCCACGGAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGC
CAAAGTCCGACCATCTTCGAGCTGTTTCCCGGCGAAGATCAAACGTTGTTGATCCGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCTTTGACGTTGTCG
ATGGTGTCGCTGCTCTCCACCTCAAGGGTTATAGTCTTGCCGGTCAAAGTTTTCACGAAGATCTGCATCTTTTTTTTTCTAGATTTGATCGGACGGACAG
AAAAGAGTGAGCTTTAAGAACTTGAGGAAAAGAAATGTATGGTAA