« Back to Ananas comosus search


Detailed information on CNT30231162


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689226Ananas comosusTriticum urartu309.0686.9168forward
CNT30359977Ananas comosusLactuca sativa25.898.1281.38145forward
CNT30116349Ananas comosusOryza nivara18.3940.8791.26103forward

Expression of CNT30231162

Peptides detected in this lncRNA

>peptide 1 (34 aa)
LIISPFLQMKSSFLPHTAHKSILFVSYLNLPYAN*

>peptide 2 (45 aa)
MLILNKKIVYEEKRIQIRIQIHKNYIGTKIVFYFLLKKRKLTSSE*

Sequence

>CNT30231162
GATTGATAATCTCTCCTTTTCTTCAAATGAAATCCAGTTTCTTACCTCATACGGCTCATAAATCAATTCTTTTTGTGTCCTATCTTAATCTACCCTATGC
TAACTGAATTTGATTTCTCATAAATCTATCCCATTTTTTCTTGGGTTAACCAGAAGAAGTTAATTACATAAGTTTCAAACCCTAATTTTGATCAATAATC
AGAATCAGTTTGATCTTTTCTCCCACCTTCAGAAGAATGAAGCATAGGTATCCCCGCAATATCGTTAGAATTTTCTGAAACGTAACTATCTCGGTTTCAC
ATATGGAATTCTATAAGATGTTCTATTTTTCCATAGAACTGTATTCGCTCAAGAAAGATTCTAGAAGATGTTAATCTTAAATAAGAAGATTGTTTACGAA
GAAAAACGAATACAAATTCGCATTCAGATACATAAGAATTATATAGGAACCAAAATAGTCTTTTATTTTCTTTTGAAAAAACGTAAATTGACTTCTTCGG
AGTAATGAGACTATTCCAATTATGATATTCGTGGAGAAAGAATCGCAATAAATGCAAGGA