Detailed information on CNT30230974


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FJX2|RL262_ARATH, E-value = 1e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522907Ananas comosusSetaria italica19.2221.7789.43123forward
CNT30536141Ananas comosusEucalyptus grandis2544.0889.38160forward
CNT30181670Ananas comosusSecale cereale16.2536.3687.5104forward
CNT3082886Ananas comosusBrassica juncea12.6631.5286.4281forward
CNT30714885Ananas comosusMalus domestica golden24.3832.0392.31156forward
CNT30355705Ananas comosusLactuca sativa34.8461.180.27223forward
CNT3023479Ananas comosusPopulus trichocarpa16.7229.8182.24107forward
CNT30318720Ananas comosusAsparagus officinalis17.546.2882.14112forward

Expression of CNT30230974

Peptides detected in this lncRNA

>peptide 1 (30 aa)
QIHTRKREMWINKEIRNFITKHEHSSYRLY*

>peptide 2 (47 aa)
MWRINSSQSISWREGAAAAAGATPTLTVEPFTFSRVIRSTWMIHFRR*

Sequence

>CNT30230974
ACAAATACACACAAGGAAAAGGGAAATGTGGATCAATAAGGAGATACGCAACTTTATAACCAAGCACGAGCATTCATCATATAGACTATACTAAGAAAAT
CAGATCCACAAAACTGAATTAACTAGTTCATGCAAAGTGCGAAGCAAAACATTATGATCATCTTATCTTAAACGCAATCTCAAAGCCATCCATCCATCCA
TCCTAACATCATCAATCTCAAAAAGAGAGAAGTAAATCGACCATAATAATAGTGAACTTAAACTTACTATGTGGCGAATTAATTCATCTCAATCGATCTC
CTGGAGGGAAGGGGCAGCTGCGGCGGCGGGGGCGACGCCGACGTTGACGGTCGAGCCGTTCACCTTCTCGCGGGTGATCCGCTCGACGTGGATGATCCAC
TTCCGGCGGTAGACCTGGACGACCTTGCCCTCGCGGCCCTTGAAGGTGCCCCGCACGACCTGGACCTCGTCGTCCTTCCGCACCGGCATCGACCGCACGC
CGTACTTGCTCCGCAGCTCGGCCGACAGCGGCGCGCTCATCAGCACCCGCCGCACGCTCGACGGCGCCGTGAAGTGCGCCTTCCGGCACTTGCGCCGCGA
GCTCGACACCCGAGGGTTGAACTTCATCGTTCGTTTCCGG