Detailed information on CNT30230907


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Ananas comosusOryza sativa54.8851.4289.57163forward
CNT3044269Ananas comosusPrunus dulcis62.6331.1681.72186forward
CNT30720826Ananas comosusTriticum spelta51.8525.8483.12154forward
CNT30597158Ananas comosusOryza meridionalis54.8823.7688.34163forward
CNT30371509Ananas comosusOryza glumipatula54.8828.1587.12163forward
CNT30105031Ananas comosusOryza longistaminata63.6424.5188.36189forward
CNT30318742Ananas comosusAsparagus officinalis34.3416.4586.27102forward
CNT30149302Ananas comosusBrachypodium distachyon56.2327.9386.23167forward
CNT30115704Ananas comosusOryza nivara30.326.6394.4490forward

Expression of CNT30230907

Peptides detected in this lncRNA

>peptide 1 (84 aa)
AAAAATSSAAAAAAAATSSVVNLAPLALSAAARPRALRSSRALRSLSSLSLVMTTLEGATPTLTVEPFTFSRVIRSTWMIHFRR*

>peptide 2 (97 aa)
GGGGDVFGCGGGGGGDVFGGEFGALGLVGGGAAAGLAVEQGLAVLVELELGDDDLGGGDADVDGRAVHLLAGDPLDVDDPLPAVDLDDLALAALEGAP

Sequence

>CNT30230907
GCGGCGGCGGCGGCGACGTCTTCGGCTGCGGCGGCGGCGGCGGCGGCGACGTCTTCGGTGGTGAATTTGGCGCCCTTGGCCTTGTCGGCGGCGGCGCGGC
CGCGGGCCTTGCGGTCGAGCAGGGCCTTGCGGTCCTTGTCGAGCTTGAGCTTGGTGATGACGACCTTGGAGGGGGCGACGCCGACGTTGACGGTCGAGCC
GTTCACCTTCTCGCGGGTGATCCGCTCGACGTGGATGATCCACTTCCGGCGGTAGACCTGGACGACCTTGCCCTCGCGGCCCTTGAAGGTGCCCCGC