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Detailed information on CNT30230544


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695659Ananas comosusOryza sativa38.7622.3893.62188reverse complement
CNT30677634Ananas comosusSetaria viridis50.7227.2794.72246reverse complement
CNT30617775Ananas comosusSesamum indicum27.6320.2494.03134reverse complement
CNT30730546Ananas comosusCorchorus capsularis35.8829.4494.25174reverse complement
CNT30406883Ananas comosusBeta vulgaris23.7144.7588.7115reverse complement
CNT30300194Ananas comosusTriticum aestivum53.6112.3692.69260reverse complement
CNT30569656Ananas comosusActinidia chinensis39.1822.5793.16190reverse complement
CNT30509374Ananas comosusSolanum lycopersicum27.0165.587.79131reverse complement
CNT30136937Ananas comosusLolium perenne23.9218.3593.97116reverse complement
CNT3018230Ananas comosusZea mays52.7835.4194.53256reverse complement
CNT30331679Ananas comosusDioscorea rotundata39.1827.7498.42190reverse complement
CNT30578120Ananas comosusOryza barthii23.9220.1493.97116reverse complement
CNT30496006Ananas comosusDigitaria exilis24.7416.7194.17120reverse complement
CNT30115844Ananas comosusOryza nivara39.5922.0494.27192reverse complement

Expression of CNT30230544

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSRRGTAEEKTPKSDPIYRNRLVNMLVNRIMKHGKKSLFIK

>peptide 2 (29 aa)
MKVVCTAWREIFHIFQDPPYNMGLKSQNK*

Sequence

>CNT30230544
ACAAGTTCGTGATGAGTTTGGTGGTCTCACAGAACGTGGGGACTGTTTCCGAAAGTTTTGTTCTACATTAACAAAGATTTGTTAGAGAGTCCAAACCCTA
AGACCATTAAATCTACCGTTCATTATATGAAACGCCTGAATCTCAAAGCCATATAAACGGCAGATTTGACCTAGGTAGTTTTTATTCTTCGGACGGTGCC
TGCTGTAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCAAGATCCACCCTACAATATGGGGTTAAAAAGCCAAA
ATAAGTGATTCGTTTTTAGCCCTTATAAAAAGAAAACTGATTCTTGAACCTCTTTCACGCTCATGTCACGTCGAGGTACTGCAGAAGAAAAAACTCCAAA
ATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTATGAAACACGGAAAAAAATCATTGTTCATCAAA