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Detailed information on CNT3023052


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W171|CYP1_SOYBN, E-value = 2e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30613544Populus trichocarpaArabis alpina24.2319.1681.82110forward

Expression of CNT3023052

Peptides detected in this lncRNA

>peptide 1 (77 aa)
RELTTVSNNNRLRSPAISRSNLLNCLHHVHPFNNLAENDMFPVKPFGLNSADKELRSISPRTGISHGKHTRDHTVKA*

>peptide 2 (47 aa)
RVDHSQQQQQASKSCHFQIQPSQLPSPRPSLQQPGRKRHVSRQAIRS*

Sequence

>CNT3023052
AGAGAGTTGACCACAGTCAGCAACAACAACAGGCTTCGAAGTCCTGCCATTTCCAGATCCAACCTTCTCAATTGCCTTCACCACGTCCATCCCTTCAACA
ACCTGGCCGAAAACGACATGTTTCCCGTCAAGCCATTCGGTCTTAACAGTGCAGACAAAGAACTGAGATCCATTAGTCCCAGGACCGGCATTAGCCATGG
AAAGCACACCAGGGATCACACGGTGAAAGCTTGAACCTTTGAAGTGAAGTGGCTTGCCGGACTTGCCAACACCTTTCTCACCGGTGCAAAGAGCACGGAA
ATTCTCGGCTGTCCTTGGAACAATATCGGCGAACAGCTCCATAACGATCCGACCAACAGATTGGCCGCCGACGGTCATGTCAAAGAATACCTTAGGATTT
GACATTGTAAAGGAGAGAGATTAGGGATTTGATTTCCGAGAAGGATTAAACGAG