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Detailed information on CNT30230519


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-151

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Ananas comosusOryza sativa69.7931.7687.59693forward
CNT30242302Ananas comosusAvena sativa69.7967.2288.89693forward
CNT30217432Ananas comosusKalanchoe fedtschenkoi67.2767.0785.63668forward
CNT30100520Ananas comosusOryza rufipogon66.8766.9487.35664forward

Expression of CNT30230519

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSEDSTSRVMVLPVRVLTKICMPPRRRSTRWSVDSFWML*

>peptide 2 (61 aa)
MSRCWSGGMPSLSWILALTLSIVSELSTSRVMVLPVRVFTKICMPPRRRSTRWSVDSFWML*

>peptide 3 (36 aa)
MTPICTDLRTTFAGHSIYWPPRRRRTRWRVDSFWML*

Sequence

>CNT30230519
AAACATGAAGCAAAACAAGAAGGCATGAAACATTAACTGATACTTACTATCCCAAATTTTTATTATTATTTAGTTAAAACTGCGAAGTCCGTCATCATAG
AACCTGCAGTTCATACTCTGAAAACTCAAACACACCAGACACAAACTGACTTTGGACTCGAACTGACGCGACAAAACGCAGAACATTCTGAAAGAGAAAT
TAACATCCAGACGCATCGGCAACGGCAGTGATGACACCCATCTGCACGGATCTGCGGACAACATTCGCTGGACACAGCATTTACTGGCCACCGCGAAGGC
GGAGAACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCGTCCTCCAACTGCTTACCGGCGAAGATGAGCCGCTGCTGGTC
CGGTGGGATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTC
ACGAAGATCTGCATGCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCGTCCTCCAACTGCT
TGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATTTTTGCCTTAACATTGTCGATGGTGTCGGAGGACTCGACCTCGAG
GGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATGCCGCCACGGAGACGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCT
GCAAGAGTCCGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGT
CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGTCAGGGTCTTGACGAAGATTTGCATCTGAAACACAGATCGACCATCAGA