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Detailed information on CNT30230026


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKA5|AT7_ORYSJ, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30148488Ananas comosusBrachypodium distachyon10.523.8786.4974forward

Expression of CNT30230026

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MHVPPRSLLSFIPLYEFNSLLGSIDRPTSKNIQKNRGGKKRKRKTKIF*

>peptide 2 (40 aa)
MSLIPFWDRSTDRLQKIFKKIGVGKKEKEKLKYFEHFLIN*

>peptide 3 (30 aa)
GKQLLIHNYNNIILHPTKSWPIDPIIIPIK*

Sequence

>CNT30230026
CTGGAAAACAATTATTAATTCATAATTATAATAATATAATATTACATCCCACCAAGAGCTGGCCCATCGATCCAATAATAATACCAATAAAATAATATCA
ATATCAAACACAAAAAGAAAAAAGAAAAAAGAAGAAGTATACAAGGGAATCAATAGTTCAATACCAATATCCCACAACCAAAAAAACCCCATCAAACCGA
TGCACGTCCCTCCTCGATCTCTTCTTAGTTTTATTCCGTTATATGAGTTTAATTCCCTTCTGGGATCGATCGACCGACCGACTTCAAAAAATATTCAAAA
AAATCGGGGTGGGAAAAAAAGAAAAAGAAAAACTAAAATATTTTGAACATTTTTTAATTAATTAATTATTTAAAAATAATTAATCCAAGTTCAACATGGC
ATCGTGGAAGGCGGTGAGGTTGGTCAAGGGGACGACGTGGACGGGCGGGCCCCAGCCGTAGTCGACCTCGGCGAAGCCCAGGCGCGTCCAGTCGGAGACG
AGCAGGTTGCGGTGGTCGGAGGTGATCTGGTAGGGGTCGCCGCCCCGACCGGCGGCCCAGCGGGCGAACTCGAGCGGGAGCCGCTTCTTGCCGTCCTTGA
TGAGCCGCACGATGTCGACGATGGAGGCGCCCGCCACCCTGCCGCTGGTGGACGAGACGCGCATGATGTAGTAGCAGTTGCCGTAGAAGCCCCCGGCGGG
GGGCA