Detailed information on CNT3022992


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C5I3|ERF76_ARATH, E-value = 5e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525755Populus trichocarpaPhaseolus vulgaris22.3320.0384.29140forward
CNT30170564Populus trichocarpaPistacia vera28.079.7583.52176forward
CNT30572283Populus trichocarpaVitis vinifera23.7631.5780.54149forward
CNT3051215Populus trichocarpaCucumis sativus24.7225.4981.29155forward

Expression of CNT3022992

Peptides detected in this lncRNA

>peptide 1 (53 aa)
HHHQHHHHCYSCWLLAAFLLLSIERTFFLTFSHDGYGKLVFALEPRNSRAAVS*

>peptide 2 (33 aa)
MKKREEGGWIYTEKEMGGSKWEGKGGVDGQRWI*

>peptide 3 (32 aa)
PPPTPPPLLFLLAAGSFLVAVDRENVFLNVLA*

>peptide 4 (29 aa)
MHFLASSTTTNNSASASFNGGRLLSRRHN*

Sequence

>CNT3022992
CACCACCACCAACACCACCACCACTGTTATTCTTGCTGGCTGCTGGCAGCTTTCTTGTTGCTGTCGATAGAGAGAACGTTTTTCTTAACGTTCTCGCATG
ATGGATATGGAAAGTTAGTCTTTGCCTTAGAGCCACGGAACTCACGTGCGGCAGTATCGTAGGCACGTGCAGCTTCCTCCGCCGTGTCGAAAGTGCCAAG
CCAAACCCGGCTCTTCTTACTCGGGTCTCTTATCTCGGCAGCGTACCTTCCCCACGGCCTCTTTCTCACTCCTCTAAAATGCACTTCCTTGCCTCCTCCA
CCACCACCAACAATTCCGCCTCCGCTAGCTTTAACGGCGGCCGTCTTCTCTCTAGGCGCCATAATTAAAGAAAAAAACTTCTTGTAGCTTTTACTTTTTG
AAAAAGGAAGCGAGCATGAAAAAGAGAGAGGAGGGGGGGTGGATTTATACAGAGAAGGAGATGGGGGGGAGTAAATGGGAAGGCAAGGGGGGCGTGGACG
GTCAACGATGGATTTGACTGTGAGAGCTGGGGCGGCTATAGATTAGCTAGAAGAGTGTGGGTAAAGAAGAATAATAAAGTGGTGTCCGAATTATATGGCA
TGTGGGATGACTAGAGAGCAAGACCGT