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Detailed information on CNT30229838


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Ananas comosusOryza sativa10014.1497.97443forward
CNT30678576Ananas comosusSetaria viridis34.7630.4397.4154forward
CNT30524653Ananas comosusSetaria italica33.6312.4499.33149reverse complement
CNT30548882Ananas comosusIpomoea triloba100.2316.8496.85444reverse complement
CNT30632593Ananas comosusVigna unguiculata101.3526.695.99449reverse complement
CNT30504983Ananas comosusNicotiana attenuata47.1811.4897.61209reverse complement
CNT30304298Ananas comosusTriticum aestivum10016.7498.19443forward
CNT30221494Ananas comosusHordeum vulgare91.232.5397.52404reverse complement
CNT30400948Ananas comosusTriticum turgidum10017.7298.19443forward
CNT30569653Ananas comosusActinidia chinensis31.8321.0195.04141forward
CNT30585815Ananas comosusMusa acuminata10018.2593.68443reverse complement
CNT30234810Ananas comosusBrassica oleracea87.1350.9992.49386forward
CNT30147389Ananas comosusMedicago truncatula10047.8997.29443forward
CNT30440683Ananas comosusAegilops tauschii92.3342.3498.53409reverse complement
CNT30247816Ananas comosusAvena sativa10021.2198.19443reverse complement
CNT30662061Ananas comosusTriticum dicoccoides10023.0898.19443forward
CNT3081478Ananas comosusBrassica juncea83.0731.7892.66368reverse complement
CNT30143344Ananas comosusLolium perenne10019.898.42443forward
CNT3016633Ananas comosusZea mays10023.1898.42443forward
CNT30218527Ananas comosusKalanchoe fedtschenkoi10029.7598.19443forward
CNT3067373Ananas comosusLeersia perrieri51.0274.8397.79226reverse complement
CNT30655299Ananas comosusRosa chinensis10015.6197.97443reverse complement
CNT30209728Ananas comosusHelianthus annuus10038.2994.58443reverse complement
CNT30683015Ananas comosusTriticum urartu10044.9798.19443forward
CNT30721611Ananas comosusTriticum spelta44.742.9598.48198forward
CNT30595506Ananas comosusOryza meridionalis24.389.8299.07108forward
CNT30369805Ananas comosusOryza glumipatula98.4230.494.95436reverse complement
CNT30154718Ananas comosusPrunus persica43.5727.8595.34193reverse complement
CNT30434588Ananas comosusPapaver somniferum40.4153.2793.3179reverse complement
CNT3037914Ananas comosusCucumis melo93.2319.4189.59413reverse complement
CNT30104484Ananas comosusOryza rufipogon59.5998.8894.7264forward
CNT30575706Ananas comosusOryza barthii10018.1897.07443reverse complement
CNT30582488Ananas comosusEchinochloa crusgalli10036.4998.42443reverse complement
CNT30116696Ananas comosusOryza nivara10011.1798.19443forward
CNT30604605Ananas comosusOryza punctata18.0634.639080forward

Expression of CNT30229838

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MLSHPSVGRDPESCLRFWPSFVDLRISPLHTKFHSPLSHSSELVSRAFRHFLATFTFNPIHHLRALYAQSFRRPLAPPVLPQLLARS*

>peptide 2 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

Sequence

>CNT30229838
ATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCCTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCC
ACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGACTTTCACTTTCAACCCGATTCACCACCTACGCGCCCTTTA
CGCCCAGTCATTCCGAAGACCACTTGCCCCCCCCGTCTTACCGCAGCTGTTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGC
ACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCC
CCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAATGTGGCTGA