Detailed information on CNT3022975


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42662|METE_PLESU, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403349Populus trichocarpaBeta vulgaris26.9352.0186.74181forward
CNT30249492Populus trichocarpaAvena sativa13.6926.9885.8792forward
CNT30136078Populus trichocarpaLolium perenne22.4758.385.43151forward
CNT309700Populus trichocarpaZea mays11.6124.0787.1878forward
CNT30367289Populus trichocarpaSorghum bicolor26.9331.7586.74181forward

Expression of CNT3022975

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSKEINSFMSLRYSKDINLVKHIQLIIAS*

>peptide 2 (56 aa)
MIIRQNFLSSLGTSELGAKMLGSCDHVAEGRFDFSIFDVAFKDSKHLLNAVCDFFF*

>peptide 3 (43 aa)
MPAPYFTPSRKTDRSFSSDLEFSIVITSASMSMIEWMMSLKFE*

>peptide 4 (37 aa)
MLLRAGLTSAYLMLLSRTASIFSMRSAISSSEGILGE*

Sequence

>CNT3022975
CAAATATCAACAGTAATATTCGTTATGACTGCTGACTTTCACTTTGAAGAAGCAGTGAGCAGGAGAGCATGAGCAAAGAAATAAACAGCTTCATGAGCTT
AAGATATTCCAAGGACATAAACCTTGTGAAACACATCCAGTTAATAATTGCTTCCTAAATTAAAAAAAGAAAACCAAGGAAAATAATCATCTCAGAAATA
ACACGGAAGAAGAAATACAAGGAAAATACTCATCTCAGAAATAACACAGATTAGACATAATTTCCGTTCGCTGATGAAAGAATGGTAATTCGTCATAATT
TCCATTCGCTGATGAAAGAATGATAATTCGTCAAAACTTTTTGAGCTCACTGGGCACTTCCGAGCTTGGTGCGAAGATGCTTGGCAGCTGCGACCATGTT
GCTGAGGGCAGGTTTGACTTCAGCATATTTGATGTTGCTTTCAAGGACAGCAAGCATCTTCTCAATGCGGTCTGCGATTTCTTCTTCTGAGGGGATCCTA
GGAGAGTGAATGTCATAAACACCAGGCCCAATGCCTGCACCATATTTCACGCCCTCACGGAAGACTGACAGAAGCTTCTCATCTGATCTGGAGTTCTCTA
TAGTGATCACATCAGCATCCATGTCAATGATTGAGTGGATGATGTCATTGAAGTTTGAGTAGCACATGTGGG