Detailed information on CNT30229741


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84M43|CESA2_ORYSJ, E-value = 1e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678004Ananas comosusSetaria viridis24.3959.5785.71140forward
CNT30381526Ananas comosusManihot esculenta28.424.5580.37163forward
CNT30144912Ananas comosusMedicago truncatula9.5820.4589.0955forward
CNT30216Ananas comosusZea mays14.2926.6284.1582forward
CNT30608876Ananas comosusGossypium raimondii30.3132.479.89174forward

Expression of CNT30229741

Peptides detected in this lncRNA

>peptide 1 (32 aa)
RLNCQIYLLFTDKVQKFICSATQFATNAVTYK*

>peptide 2 (29 aa)
LDLIAKYIYCSLIKYKNSFAVLPNLQQMQ*

>peptide 3 (35 aa)
MRTHRREKIEARRMDQTTTIVGVRFCRPIKPLRKG*

>peptide 4 (41 aa)
MDNHPEGEKELPKERTPRLRWAETPPMTQNCSFLHHSSIPTP

Sequence

>CNT30229741
CTCGACTTAATTGCCAAATATATTTATTGTTCACTGATAAAGTACAAAAATTCATTTGCAGTGCTACCCAATTTGCAACAAATGCAGTGACTTATAAATA
ACAAGCAATAACAACAATAAACAACACTTACCACCTATAGACACTTTGGTACAAACAGCATCCTGAAGATGTTCTGTCACTAGAAATAAAAACTCACCCA
TTCATTAGATAGCTAACAAGCATATAGCACATCTCCACCCTCCCCTCATTTCTAGCACCTTTCTCTCTTCTCTTTCTTAACAGTTAATTCCACATTGCTG
GACATCAGGCCCGGTCACACGGGTGGTGAAGGGGTCGATGCGAACCCACAGAAGGGAAAAGATTGAAGCAAGAAGGATGGACCAGACGACAACAATTGTT
GGAGTTCGGTTCTGCCGGCCCATCAAACCCTTAAGGAAGGGGTAGAGATGGACAATCACCCAGAAGGCGAAAAAGAGCTTCCCAAAGAGAGGACCCCACG
ACTGAGGTGGGCGGAGACGCCACCGATGACCCAGAACTGCTCGTTCCTCCACCACTCGTCTATCCCAACACCAC