Detailed information on CNT30229354


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLX4|RK2_NASOF, E-value = 4e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225539Ananas comosusHordeum vulgare9.7322.4698.4464reverse complement
CNT3077259Ananas comosusBrassica juncea38.7528.6295.69255forward
CNT30607759Ananas comosusGossypium raimondii30.76.7593.07202forward
CNT30687250Ananas comosusTriticum urartu24.3218.2686.88160forward
CNT30622146Ananas comosusCajanus cajan30.2413.9692.46199forward
CNT30360476Ananas comosusLactuca sativa39.0628.7295.72257forward
CNT3054389Ananas comosusAmborella trichopoda39.3610.6493.82259forward

Expression of CNT30229354

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRWEMKTISPTSVENLFYGIDAYDLPLYALR*

>peptide 2 (51 aa)
MTSPSMPCGNDSSGIMTFTTMMPSIDQIISWIGFHLTVYGSIACSRGRSFV*

>peptide 3 (53 aa)
FKETCYKDSPVHEDSYLDTYQGNWELGRLKEEKNEKTFLWFEKPFLTFLFSKI*

>peptide 4 (88 aa)
LKRHAIKIAQFTKILILIPIKVIGNWEDLKKRKMKRLFYGLKNLFLLFFSLKFRIIKKLKKLIKITFRLVIQELVRKYYNERNIGVCR*

Sequence

>CNT30229354
TTTAAAGAGACATGCTATAAAGATAGCCCAGTTCACGAAGATTCTTATCTTGATACCTATCAAGGTAATTGGGAATTGGGAAGACTTAAAGAAGAGAAAA
ATGAAAAGACTTTTTTATGGTTTGAAAAACCTTTTCTTACTTTTCTTTTCTCTAAAATTTAGAATTATAAAAAAATTAAAAAAATTAATAAAAATAACCT
TTAGGCTTGTCATCCAAGAACTTGTTCGGAAATACTATAATGAAAGGAACATAGGAGTTTGTCGCTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTA
TAGAACCTATCACTAAAATACCCCTAGAAAGGGATAGGGCTAAGTGGAGCGAAAAGGGTTTTCCATGAGATGGGAAATGAAAACTATTAGCCCCACATCC
GTCGAAAATCTATTTTACGGTATAGACGCTTATGACCTCCCCCTCTATGCCTTGCGGTAATGATTCCTCTGGCATTATGACCTTTACCACAATGATGCCG
TCTATAGATCAAATTATTTCGTGGATTGGATTTCACTTGACTGTCTACGGCTCCATTGCGTGTTCTCGGGGTAGAAGTTTTGTATAAATGTATCGCCGTG
TTATTAAGTATTTTGCTTTAAGTTCTTTTCTCTATAAGAGGTGGAATAGAATAAAAAA