Detailed information on CNT30229217


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 4e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521857Ananas comosusSetaria italica26.363.7190.4863forward
CNT30589156Ananas comosusMusa acuminata23.8519.1392.9857forward
CNT3087835Ananas comosusVigna radiata24.272.4989.6658forward
CNT30437038Ananas comosusAegilops tauschii32.2210.0384.4277forward
CNT30140539Ananas comosusLolium perenne22.599.0598.1554forward
CNT30338289Ananas comosusEragrostis tef34.7330.0792.7783forward
CNT30369972Ananas comosusOryza glumipatula20.924.539650forward
CNT30583280Ananas comosusEchinochloa crusgalli21.342.7990.251forward
CNT30116167Ananas comosusOryza nivara20.927.159650forward
CNT30603672Ananas comosusOryza punctata21.763.5890.3852forward

Expression of CNT30229217

Peptides detected in this lncRNA

>peptide 1 (71 aa)
EPHAGRLVRVADLRRPLPPRPLPHATVAPHRRRRRRRRGGGGGGGGRGSLFHCSAWKQGRRSLCFGFQIQT*

>peptide 2 (73 aa)
RATRGPPCAGRGSPPPTSPTAAAARHGSAASEAAAAAARRRRRRRWEGKPLPLLCLETGEEESLLWFSNTNIK*

Sequence

>CNT30229217
CCGAGCCACACGCGGGCCGCCTTGTGCGGGTCGCGGATCTCCGCCGCCCACTTCCCCCACGGCCGCTGCCGCACGCCACGGTAGCGCCGCATCGGAGGCG
GCGGCGGCGGCGGCGAGGCGGAGGAGGAGGAGGAGGTGGGAGGGGAAGCCTCTTCCATTGCTCTGCTTGGAAACAGGGGAGGAGGAGTCTCTGCTTTGGT
TTTCAAATACAAACATAAAATAATAATAATAATAATAAG