Detailed information on CNT30229076


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG84|UBI4P_NICSY, E-value = 1e-155

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528694Ananas comosusEucalyptus grandis52.3661.3489.5676forward
CNT30315749Ananas comosusCorylus avellana53.2942.3687.35688forward
CNT30513431Ananas comosusJuglans regia53.2170.5387.77687forward
CNT30541358Ananas comosusBrassica napus51.1250.8185.45660forward
CNT30311067Ananas comosusCamelina sativa53.2954.4785.32688forward
CNT3075399Ananas comosusBrassica juncea51.253.3585.48661forward
CNT30583684Ananas comosusEchinochloa crusgalli53.2132.7386.46687forward
CNT30603673Ananas comosusOryza punctata53.1469.3687.61686forward

Expression of CNT30229076

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEAREIERGERGSTLEGDWDLGTLFLGFSKRWDEG

>peptide 2 (39 aa)
MYMKYQSTKVRYSIAHNNLALSLFIRNHHKNIVEKFADN*

>peptide 3 (40 aa)
MVSELSTSRVIVFPVRVFTKICIPPRRRSTRWRVDSFWML*

>peptide 4 (60 aa)
MKGGFLLDVVVGEGAAVLELLPGEDETLLIRGNPLLVLDLGLHIVDGVGALHLKGDRLPR*

>peptide 5 (52 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSRVIVFPVRVLTKICIPPLSLSTR*

Sequence

>CNT30229076
CACAAAATCCAGTCACCACATTAGATTTACCTAGACCTTAGAAGGTTGCATTCAATCAGCACAAGCTAGATAATCAATACCATAACCATATTATGTATAT
GAAATACCAAAGCACGAAAGTACGATATAGCATAGCACACAATAACCTGGCATTATCTTTATTTATTAGAAACCACCACAAGAACATAGTAGAAAAGTTC
GCAGACAACTGACCACAGAGAACAAAGCAAACGACATATAGAGTATATTATAGACCCACAGCAAAGAACACGAGACGAGACTCAATCAGATAATTCATAG
AACAGGACGCAGGCGCGAAGAGCGCGGATAATTGCCAGGGACCCCATCGATAGCACGTTGGAAGCTTACATACCACCGCGGAGGCGGAGCACGAGGTGGA
GGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTC
CTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTCTTGACGAAGATCTGCATC
CCACCCCTCAGCCTGAGCACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGA
GACGCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATCGTCTTCCC
CGTTAGGGTTTTCACGAAGATCTGCATACCGCCGCGGAGACGGAGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCG
TCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGC
TCTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGGGTTTTCACGAAGATCTGCATCTGTTGAATCGACCGCAGAGGGAGAAACCAAATCAAATCAGATCA
CAAAGAGGAGAAACAAAAATAAAGAAATTGATCCAAAAATCACAAGCAAAACTCCCCGAATAAGATAAATCTAAGCTACAAGAGATGGAAGCGAGAGAGA
TCGAGAGGGGAGAGAGAGGAAGCACCTTGGAAGGAGATTGGGATCTCGGAACTCTGTTTCTAGGGTTTTCGAAGCGATGGGATGAGGGAGA