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Detailed information on CNT3022907


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639249Populus trichocarpaNymphaea colorata20.35.2985.1981forward
CNT30316599Populus trichocarpaCorylus avellana25.3135.5691.09101forward
CNT30381644Populus trichocarpaManihot esculenta59.945.9687.87239forward
CNT30609427Populus trichocarpaGossypium raimondii58.436.9383.26233forward
CNT30654406Populus trichocarpaRosa chinensis42.1133.2781.55168forward
CNT30362142Populus trichocarpaSorghum bicolor29.0719.8382.76116forward
CNT3031918Populus trichocarpaTheobroma cacao20.831.4490.3683forward

Expression of CNT3022907

Peptides detected in this lncRNA

>peptide 1 (29 aa)
METIMPVRASNHGSNKCIWVRLRGFLPRM*

>peptide 2 (31 aa)
PPSLSSIIFTSQDVPSPNSIAAKSSYQKPHR*

>peptide 3 (70 aa)
MFQVQTLLQQNHLTKSHTDKLLKTVNCGISWFPRCWWWWRSWKHWGNCREYCVLVNPSSFVTRQGHKCCN*

Sequence

>CNT3022907
CCTCCTTCCTTAAGTAGCATCATCTTTACCTCCCAAGATGTTCCAAGTCCAAACTCTATTGCAGCAAAATCATCTTACCAAAAGCCACACAGATAAACTC
TTAAAAACTGTCAACTGTGGCATCTCATGGTTTCCAAGGTGCTGGTGGTGGTGGAGGAGTTGGAAACATTGGGGGAACTGCAGAGAATATTGTGTTCTTG
TCAATCCCAGTAGTTTTGTCACCAGACAAGGCCACAAGTGCTGCAACTAATCCTGCATTTCCAGCAATCGTTGGCTCTGTATAATTATAGTTGGTGCGAA
CATCATGGAAACCATCATGCCGGTCAGGGCCAGCAACCATGGCTCCAACAAGTGTATTTGGGTTCGGCTTCGAGGATTCTTGCCCAGGATGTAATCAAT