Detailed information on CNT30229065


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CD29|NU2C2_PHAVU, E-value = 2e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201820Ananas comosusPisum sativum68.5844.8295.22251forward
CNT30507978Ananas comosusNicotiana attenuata25.682.7786.1794reverse complement
CNT30223508Ananas comosusHordeum vulgare29.7818.2398.17109reverse complement
CNT30553994Ananas comosusOryza glaberrima29.7815.3398.17109forward
CNT30622952Ananas comosusDaucus carota22.9535.994.0584reverse complement
CNT30153321Ananas comosusPrunus persica67.4950.9389.47247reverse complement
CNT30425623Ananas comosusPapaver somniferum60.6648.6894.14222forward
CNT3053197Ananas comosusAmborella trichopoda70.4916.1591.86258forward
CNT3025558Ananas comosusPopulus trichocarpa82.7937.4191.42303forward
CNT3036892Ananas comosusCucumis melo69.1323.2195.26253forward
CNT30150988Ananas comosusBrachypodium distachyon103.0121.5990.98377forward

Expression of CNT30229065

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MRFPNIMLRIARISRRRCHSFDEKEKGISKIRVAEAEAATFEVTERRKATTGVGESESKRGFLTSCMRLSSRTAPK*

>peptide 2 (32 aa)
ISDLTDGRICKHTFHACLSNSNEIPQYHAKNS*

Sequence

>CNT30229065
ATATCTGATTTGACCGATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAATGAGATTCCCCAATATCATGCTAAGAATAGCTAGG
ATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAAGAAAAAGGAATATCGAAAATTCGCGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAA
GAAGAAAAGCAACGACTGGAGTGGGAGAGTCAGAGTCGAAAAGAGGATTCCTCACTTCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAA
GAAAGAAGAACTCATCTTCTTTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCAT