Detailed information on CNT30229037


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG85|UBI1P_NICSY, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674319Ananas comosusSetaria viridis52.7281.7587.24815forward
CNT30528977Ananas comosusEucalyptus grandis58.4167.3988.82903forward
CNT30477817Ananas comosusArabidopsis halleri58.9985.2383.77912forward
CNT30114615Ananas comosusEutrema salsugineum56.4788.9984.19873forward

Expression of CNT30229037

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVIVFPVRVFTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (39 aa)
MYMKYQSTKVRYSIAHNNLALSLFIRNHHKNIVEKFADN*

>peptide 3 (52 aa)
MSLCWSGGMPSLSWILAFTLSMVSELSTSRVIVFPVRVLTKICIPPRRRRTR*

>peptide 4 (43 aa)
MEAREIERGERGSTLEGDWDLGTLFLGFSKRWDEGEERSGKGRF

>peptide 5 (60 aa)
MKGGFLLDVVVGEGAAVLELLPGEDETLLIRGNPLLVLDLGLHIVDGVGALHLKGDRLPR*

>peptide 6 (61 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSRVIVFPVRVLTKICIPPLSLSTRWRVDSFWML*

Sequence

>CNT30229037
CACAAAATCCAGTCACCACATTAGATTTACCTAGACCTTAGAAGGTTGCATTCAATCAGCACAAGCTAGATAATCAATACCATAACCATATTATGTATAT
GAAATACCAAAGCACGAAAGTACGATATAGCATAGCACACAATAACCTGGCATTATCTTTATTTATTAGAAACCACCACAAGAACATAGTAGAAAAGTTC
GCAGACAACTGACCACAGAGAACAAAGCAAACGACATATAGAGTATATTATAGACCCACAGCAAAGAACACGAGACGAGACTCAATCAGATAATTCATAG
AACAGGACGCAGGCGCGAAGAGCGCGGATAATTGCCAGGGACCCCATCGATAGCACGTTGGAAGCTTACATACCACCGCGGAGGCGGAGCACGAGGTGGA
GGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTC
CTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTCTTGACGAAGATCTGCATC
CCACCCCTCAGCCTGAGCACGAGGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAAGATGA
GCCTTTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTCCC
CGTTAGGGTTTTGACGAAGATCTGCATACCGCCGCGGAGACGGAGGACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCG
TCCTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGC
TCTCCACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATACCGCCGCGGAGACGGAGCACAAGGTGGAGGGTCGACTCCTTCTG
GATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATCTTG
GCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGGGTTTTCACGAAGATCTGCATCTGTTGAATCGACCGCA
GAGGGAGAAACCAAATCAAATCAGATCACAAAGAGGAGAAACAAAAATAAAGAAATTGATCCAAAAATCACAAGCAAAACTCCCCGAATAAGATAAATCT
AAGCTACAAGAGATGGAAGCGAGAGAGATCGAGAGGGGAGAGAGAGGAAGCACCTTGGAAGGAGATTGGGATCTCGGAACTCTGTTTCTAGGGTTTTCGA
AGCGATGGGATGAGGGAGAGGAAAGGTCGGGGAAGGGGAGATTTAT