Detailed information on CNT30228948


BLAST search results

BLAST vs Swiss-Prot:
sp|P18123|CATA3_MAIZE, E-value = 5e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519943Ananas comosusSetaria italica104.4522.3383.61305forward
CNT30243876Ananas comosusAvena sativa41.115.9488.33120forward
CNT30475173Ananas comosusSaccharum spontaneum21.238.3487.162forward

Expression of CNT30228948

Peptides detected in this lncRNA

>peptide 1 (95 aa)
VHEVHEPIIVIVVQGTLWCIHWQHQVVWAQPVPLRVGVREDPALQHLVVGVVDARHDEPRPEGQLLVLGEEVVDVLGPCLGVVQRVEVVLVLVVRV

>peptide 2 (43 aa)
MPGTTSPGPKASCSFSAKKLSMSSGHVLVSSSGSKSYWSSWSGS

Sequence

>CNT30228948
CTGTGCATGAAGTTCATGAGCCCATCATAGTGATTGTTGTGCAGGGCACACTTTGGTGCATTCACTGGCAGCATCAGGTAGTTTGGGCCCAGCCTGTACC
GCTGCGTGTCGGCGTACGCGAAGACCCGGCATTGCAGCATCTTGTCGTCGGAGTAGTAGATGCCCGGCACGACGAGCCCCGGCCCGAAGGCCAGCTGCTC
GTTCTCGGCGAAGAAGTTGTCGATGTCCTCGGGCCATGTCTTGGTGTCGTCCAGCGGGTCGAAGTCGTACTGGTCCTCGTGGTCCGGGTCCA