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Detailed information on CNT30228911


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 1e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526024Ananas comosusPhaseolus vulgaris57.4267.5784.34894forward
CNT30710308Ananas comosusGlycine max41.6270.1387.81648forward
CNT30169895Ananas comosusPistacia vera56.2651.2985.39876forward
CNT30636104Ananas comosusCapsicum annuum58.8375.2784.06916forward
CNT30242826Ananas comosusAvena sativa58.773.1288.07914forward
CNT307928Ananas comosusZea mays58.8376.8586.46916forward
CNT30608559Ananas comosusGossypium raimondii57.3558.5286893forward
CNT30653057Ananas comosusRosa chinensis58.8369.2485.15916forward
CNT30722465Ananas comosusTriticum spelta53.1173.2586.34827forward
CNT30595768Ananas comosusOryza meridionalis58.8366.6286.14916forward
CNT30149632Ananas comosusBrachypodium distachyon42.0768.387.18655forward
CNT30174646Ananas comosusVigna angularis56.0783.7887.97873forward
CNT30113839Ananas comosusFicus carica47.5365.1486.76740forward
CNT3066362Ananas comosusSelaginella moellendorffii58.6492.684.99913forward

Expression of CNT30228911

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MKGGFLLDVVVGEGAAVLELLPGEDETLLIRGNPLLVLDLGLHIVDGVGALHLKGDRLPR*

>peptide 2 (44 aa)
MEAREIERGERGSTLEGDWDLGTLFLGFSKRWDEGEERSGKGRFI

>peptide 3 (40 aa)
MVSELSTSRVIVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 4 (40 aa)
MVSELSTSRVIVFPVRVFTKICIPPRRRSTRWRVDSFWML*

>peptide 5 (39 aa)
MYMKYQSTKVRYSIAHNNLALSLFIRNHHKNIVEKFADN*

>peptide 6 (36 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSRGDRLPR*

Sequence

>CNT30228911
ATAGAGAAGCACAAAATCCAGTCACCACATTAGATTTACCTAGACCTTAGAAGGTTGCATTCAATCAGCACAAGCTAGATAATCAATACCATAACCATAT
TATGTATATGAAATACCAAAGCACGAAAGTACGATATAGCATAGCACACAATAACCTGGCATTATCTTTATTTATTAGAAACCACCACAAGAACATAGTA
GAAAAGTTCGCAGACAACTGACCACAGAGAACAAAGCAAACGACATATAGAGTATATTATAGACCCACAGCAAAGAACACGAGACGAGACTCAATCAGAT
AATTCATAGAACAGGACGCAGGCGCGAAGAGCGCGGATAATTGCCAGGGACCCCATCGATAGCACGTTGGAAGCTTACATACCACCGCGGAGGCGGAGCA
CGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCTGCAAAGATCAGACGCTGCTGGTCCGGTGG
GATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAG
ATCTGCATGCCACCGCGGAGGCGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGG
CGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGGTGA
TCGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATACCGCCGCGGAGACGGAGGACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCGAG
GGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATG
GTGTCGGAGCTCTCCACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATACCGCCGCGGAGACGGAGCACAAGGTGGAGGGTCG
ACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGGGGAATCCCCTCCTTGTC
CTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGGGTTTTCACGAAGATCTGCATCTGTTGA
ATCGACCGCAGAGGGAGAAACCAAATCAAATCAGATCACAAAGAGGAGAAACAAAAATAAAGAAATTGATCCAAAAATCACAAGCAAAACTCCCCGAATA
AGATAAATCTAAGCTACAAGAGATGGAAGCGAGAGAGATCGAGAGGGGAGAGAGAGGAAGCACCTTGGAAGGAGATTGGGATCTCGGAACTCTGTTTCTA
GGGTTTTCGAAGCGATGGGATGAGGGAGAGGAAAGGTCGGGGAAGGGGAGATTTATA