Detailed information on CNT30228621


BLAST search results

BLAST vs Swiss-Prot:
sp|P08834|NU1M_CITLA, E-value = 3e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Ananas comosusOryza sativa86.313.0294.43359reverse complement
CNT30501657Ananas comosusCoffea canephora61.35.1989.41255reverse complement
CNT30187493Ananas comosusSecale cereale59.6254.6397.98248reverse complement
CNT30401101Ananas comosusTriticum turgidum69.7123.8396.55290reverse complement
CNT30592620Ananas comosusMusa acuminata62.2611.3989.58259reverse complement
CNT30437037Ananas comosusAegilops tauschii37.545.0997.44156reverse complement
CNT30664530Ananas comosusTriticum dicoccoides57.6967.0498.33240reverse complement
CNT30598800Ananas comosusFraxinus excelsior43.2748.3990.56180reverse complement
CNT30207841Ananas comosusHelianthus annuus79.3312.3287.88330reverse complement
CNT30680154Ananas comosusTriticum urartu80.7796.2897.02336reverse complement
CNT30480890Ananas comosusArabidopsis halleri38.748.3590.06161reverse complement
CNT30354619Ananas comosusLactuca sativa59.1314.7789.84246reverse complement
CNT30574571Ananas comosusVitis vinifera94.716.490.1394reverse complement
CNT3052251Ananas comosusAmborella trichopoda35.582.5294.59148reverse complement
CNT3099667Ananas comosusOryza rufipogon87.7415.9297.26365reverse complement
CNT30115707Ananas comosusOryza nivara86.38.2494.43359reverse complement
CNT30557320Ananas comosusPanicum hallii74.0469.3795.78308reverse complement
CNT30335348Ananas comosusCynara cardunculus52.460.2288.99218reverse complement

Expression of CNT30228621

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVPYEVSIGLILIVRLVSTFGSAKAIARIFP*

>peptide 2 (36 aa)
MLLSISPKRIPPLLPGSAYRGRDAVGPGARASWVGV*

>peptide 3 (63 aa)
MSPTRPDFNYFDFLGGFGQEGQNRYAAFYQSQADTPPASRVRLPRKRCGRTRGQSKLGWGIEP*

Sequence

>CNT30228621
ATGTCTCCGACGCGACCGGACTTCAACTATTTTGATTTTCTAGGCGGGTTCGGTCAGGAGGGACAAAATAGATATGCTGCTTTCTATCAGTCCCAAGCGG
ATACCCCCCCTGCTTCCAGGGTCCGCTTACCGAGGAAGAGATGCGGTAGGACCCGGGGCCAGAGCAAGTTGGGTTGGGGTATAGAGCCGTAAGCGCGGTG
GGGGTGACAGAGGACGTGCTCGTACGGTTCATAGTTGGGTATTATATTCTCGTGGATTGTTGGGAACGTCCTCTATATTCGAAATATGCCTTTCTAGGAG
CATTACGATCTGCAGCTCAAATGGTCCCTTATGAAGTCTCTATTGGTCTTATTCTTATTGTGCGCCTTGTGAGCACGTTTGGATCCGCGAAGGCAATCGC
TCGGATCTTCCCCTAA