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Detailed information on CNT3022855


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FUB7|CHSY_HYPAN, E-value = 1e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Populus trichocarpaQuercus lobata50.9483.8581.87353forward
CNT30524888Populus trichocarpaPhaseolus vulgaris12.8423.4885.3989forward
CNT30628726Populus trichocarpaVigna unguiculata83.4152.6478.37578forward
CNT30156257Populus trichocarpaPistacia vera95.5346.1683.38662forward
CNT3096581Populus trichocarpaSolanum tuberosum66.0924.5279.04458forward
CNT30192407Populus trichocarpaSecale cereale20.3521.1180.14141forward
CNT3087878Populus trichocarpaVigna radiata45.7420.2879.18317forward
CNT30145784Populus trichocarpaMedicago truncatula40.1225.6580.22278forward
CNT30355925Populus trichocarpaLactuca sativa31.8949.3382.35221forward
CNT30705527Populus trichocarpaPrunus avium19.1928.7387.97133forward
CNT30645210Populus trichocarpaCannabis sativa35.0632.184.77243forward
CNT3030385Populus trichocarpaTheobroma cacao24.8243.1187.21172forward

Expression of CNT3022855

Peptides detected in this lncRNA

>peptide 1 (40 aa)
PPGCAIQKREFQSEMPRGLNASVRLFSTFFEISPGTSLRR*

Sequence

>CNT3022855
TCCACCAGGGTGCGCTATCCAGAAAAGGGAGTTCCAGTCCGAGATGCCTAGAGGCTTGAACGCCTCAGTCAGGCTCTTCTCAACATTCTTTGAAATAAGC
CCAGGAACATCCTTGAGGAGGTGAAATGTAAGCCCAACTTCACGGAGATGTCCATCTATAGCCCCATCGCTGTCGGGTAGAATAGTTTGGGCTGCTGAGA
CTAGCTCAAATAAAGGCTTCTCGACTCCTATCACTGGGTCAGAGCCTATTATAAGAGCAGCTGCGCCATCGCCAAACAATGCTTGACCAACAAGGCTATC
AAGATGAGTATCGCTAGGGCCTCGAAATGTCACGGCTGTTATTTCAGAGCACACGACTAGCACACGAGCACCTTTGTTGTTCTCGGCGAGGTCCTTAGCT
AGGCGGAGCACCGTGCCACCAGCAAAACAACCTTGTTGATACATCATCAAACGTTTGACTGATGGACGAAGGCCTAAAAGTTTAGTGAGCTGATAGTCAG
CCCCGGGCATGTCCACACCACTGGTTGTGCAAAACACTAGATGAGTTATTTTGGACTTGGACTGTCCCCATTCCTTGATGGCCTTGGTAGCTGCTTCTTT
GCCTAACTTTGGTACCTCCACCACCACCATATCTTGCCTGGCATCCAATGAAGGTGCCATGTAGGCGCGCATATCAGGATTTTCCTTCAACAT