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Detailed information on CNT30228519


BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 3e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523988Ananas comosusSetaria italica13.130.787.13101forward
CNT30565935Ananas comosusActinidia chinensis13.2320.9984.31102forward
CNT30243815Ananas comosusAvena sativa13.3634.5687.38103forward
CNT30463851Ananas comosusSaccharum spontaneum17.1222.2683.33132forward

Expression of CNT30228519

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPRQGRKTGQIRSDQMRPAVGSSVVLVLAGGGRRAGRVCCRWRATARR*

Sequence

>CNT30228519
CTTAATTATTTTATATAATTTAATAATACGTAAGAATAGAGGAATCTGCATCCATCTTATTTTATTTCTTTCTATTTAATTCAAGCTTGGTCCAGATAAA
GACTAGGCCCAAATGTGAACATCCGCATTTTATTTGCCACATACCAAAACACCACCAGCGGGATACGGGCCATACGGCATACAGCATACAGCATAGCTAG
CAAGCACTGCTGATCAAAATAGGAAAAAAAGAAAAAAAAGAAAAAAAAAAAACTAAAAATGCCGAGACAGGGAAGGAAGACAGGTCAGATCAGATCAGAT
CAGATGAGGCCAGCTGTCGGCAGCTCAGTGGTCCTCGTCCTTGCCGGCGGCGGGCGTAGAGCTGGTAGGGTTTGCTGTCGGTGGCGAGCCACTGCTCGAC
GGTGAAGAGCTGCTGGGCGCAGGCGGCGTGGGGCCCGGTCGTCGTCACCTCCACGTAGTTGCAGTACCACCCGTGGTTGGCCCCGCTGCCGTCCGACGTC
AGGTTCATCCAGCAGGGCGGCGACGTGGTGACGCACTTTCCGCACCCGCTGAAGCTGTCGATATTGCCGTTCTCGAAGTAGTCGTGGCCGCTCCCCATCA
TCCCGCCCCACGACACCAGATTCTTGATCTCGGAACGGACGCGATCCTTTCCCGCCAAGGTAATGCCGATCACAGAGTCCGTGCCCGCAGAGTCCAGGGT
CCCCGTTTTCACGCGCAGAGTGTAAAGGCACTCGCTTCCCGCGCCGCAGCTCGACCGCGATCCCGCGCTCT