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Detailed information on CNT3022840


BLAST search results

BLAST vs Swiss-Prot:
sp|P48386|CHS1_CAMSI, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524257Populus trichocarpaSetaria italica9.4526.0682.6192forward
CNT30381108Populus trichocarpaManihot esculenta36.2463.2679.89353forward
CNT30524977Populus trichocarpaPhaseolus vulgaris32.8559.8179.69320forward
CNT30195656Populus trichocarpaPisum sativum42.8136.7480.58417forward
CNT30486019Populus trichocarpaOlea europaea29.1649.0577.82284forward
CNT30507146Populus trichocarpaNicotiana attenuata46.242.2978.89450forward
CNT3045136Populus trichocarpaPrunus dulcis37.0658.0481.99361forward
CNT3096662Populus trichocarpaSolanum tuberosum43.6346.678.59425forward
CNT30564019Populus trichocarpaActinidia chinensis24.5432.2583.26239forward
CNT3088050Populus trichocarpaVigna radiata13.4526.183.97131forward
CNT30171320Populus trichocarpaTrifolium pratense43.5399.0780.42424forward
CNT30143557Populus trichocarpaMedicago truncatula46.6143.3679.52454forward
CNT30466645Populus trichocarpaSaccharum spontaneum9.4530.3684.7892forward
CNT30610101Populus trichocarpaGossypium raimondii10037.3681.01974forward
CNT30647274Populus trichocarpaRosa chinensis99.3855.6679.44968forward
CNT30151821Populus trichocarpaPrunus persica37.5863.5480.87366forward
CNT30114123Populus trichocarpaFicus carica99.7960.4980.66972forward

Expression of CNT3022840

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGYFGLGLTPFLDGLGSCFFTQPWYLDHHHVLSSIQ*

>peptide 2 (74 aa)
EHHSLNSEPRPKPKKHTPFQPFSSRLKPILSRFLSHLIQNKQNTGTRHISILTQHMSSGSQFLWFQRQLSLHLV*

>peptide 3 (53 aa)
MALVAASLPNLGTSTTTMSCLASNEGAMYSHTLGFSFKISSVKYMYRFLIMDFS

Sequence

>CNT3022840
GAGCACCACAGTCTCAACAGTGAGCCCAGGCCCAAACCCAAAAAGCACACCCCATTCCAGCCCTTCTCCAGTAGATTGAAGCCCATCCTCAGCAGATTTC
TTTCTCATCTCATCCAAAATAAACAGAACACAGGCACTCGACATATTTCCATACTCACTCAGCACATGTCTAGTGGCTCGCAGTTTCTCTGGTTTCAGCG
CCAACTTAGCCTCCACCTGGTCTAGAATTGCTGGTCCACCAGGGTGCGCTATCCAGAAAAGGGAGTTCCAGTCCGAGATGCCCAGAGGCTTGAACGCCTC
AGTCAGGCTCTTCTCAACATTCTTTGAAATAAGCCCAGGAACATCCTTGAGGAGGTGAAATGTAAGCCCAACTTCACGGAGATGTCCATCTATAGCCCCA
TCGCTGTCGGGTAGAATAGTTTGGGCTGCTGAGACTAGCTCAAATAAAGGCTTCTCGACTCCTATCACTGGATCAGAGCCTATTACAAGAGCAGCTGCGC
CATCGCCAAACAATGCTTGACCAACAAGGCTATCAAGATGAGTATCGCTAGGGCCTCGAAATGTCACGGCTGTTATTTCAGAGCACACGACTAGCACACG
AGCGCCTTTGTTGTTCTCGGCGAGGTCCTTAGCAAGACGGAGCACCGTGCCACCAGCGAAACAACCTTGTTGATACATCATAAAACGTTTGACCGATGAG
CGGAGGCCTAAAAGTTTAGTAAGTTGATAGTCAGCCCCGGGCATGTCCACGCCACTAGTTGTGCAAAACACTAGATGGGTTATTTTGGACTTGGGTTGAC
CCCATTCCTTGATGGCCTTGGTAGCTGCTTCTTTACCCAACCTTGGTACCTCGACCACCACCATGTCCTGTCTAGCATCCAATGAAGGCGCCATGTATTC
ACACACACTAGGATTTTCTTTCAAGATCTCCTCAGTCAAGTACATGTACCGCTTCTTGATCATGGATTTCTCAC