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Detailed information on CNT30228329


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677945Ananas comosusSetaria viridis98.5513.4791.18204forward
CNT3021516Ananas comosusCitrullus lanatus99.5211.295.15206forward
CNT30524944Ananas comosusPhaseolus vulgaris68.1214.1692.2141forward
CNT30199301Ananas comosusPisum sativum85.9960.7591.01178reverse complement
CNT30492561Ananas comosusOlea europaea26.096.6194.4454reverse complement
CNT30710142Ananas comosusGlycine max63.2929.3793.13131forward
CNT30284960Ananas comosusTriticum aestivum98.5522.9791.18204forward
CNT30384007Ananas comosusTriticum turgidum98.5523.3789.71204forward
CNT3083498Ananas comosusVigna radiata44.4439.6691.392reverse complement
CNT30543269Ananas comosusBrassica napus87.446.1195.03181forward
CNT30237740Ananas comosusBrassica oleracea36.236.2690.6775forward
CNT3018194Ananas comosusZea mays98.5534.8191.18204forward
CNT30610163Ananas comosusGossypium raimondii82.6132.1490.06171forward
CNT30213923Ananas comosusHelianthus annuus60.3923.992.8125reverse complement
CNT30684701Ananas comosusTriticum urartu98.5544.0691.18204forward
CNT30356947Ananas comosusLactuca sativa10040.9995.17207forward
CNT30416238Ananas comosusPapaver somniferum10027.0293.72207forward
CNT30324879Ananas comosusAsparagus officinalis62.837.0496.15130reverse complement
CNT30604848Ananas comosusOryza punctata58.453788.43121reverse complement

Expression of CNT30228329

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MRFFTSYGSSFNSFEVIGSFSSFENLLPSSTPSRRV

>peptide 2 (46 aa)
LATLRKAEFGFLGVIVEKLTDKSPLLSLYRTVHEIFHLIRLLVQFF*

Sequence

>CNT30228329
CTCTGGCAACTTTACGTAAGGCAGAGTTTGGTTTTTTGGGGGTGATAGTGGAAAAGTTGACAGATAAGTCACCCTTACTGTCACTCTACAGAACCGTACA
TGAGATTTTTCACCTCATACGGCTCCTCGTTCAATTCTTTTGAAGTAATTGGATCCTTTTCTTCGTTCGAGAATCTCCTCCCTTCCTCCACTCCATCCCG
AAGAGTA