Detailed information on CNT30228140


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30438126Ananas comosusAegilops tauschii32.7925.9680.28142forward

Expression of CNT30228140

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MHSTRKRALERSLPGASPFPNPTISFPLKLPRFGG*

>peptide 2 (35 aa)
MRKRSFVDKARSVLDLRARVVRPRPTSIRAYALHS*

>peptide 3 (72 aa)
PGINRAISRPFAIAIRAARLLTAWLRYRSIVVVGLKRSLPTIPSCLCYSALSFARSKQDEEAKLRRQGSFRA*

Sequence

>CNT30228140
TGCCGGGGATAAATAGGGCTATAAGTAGGCCGTTTGCTATTGCTATAAGGGCTGCTCGCCTTTTGACGGCTTGGCTTCGCTATCGCTCAATTGTAGTGGT
CGGCCTTAAAAGGAGTCTTCCTACCATACCATCATGCCTATGTTATAGTGCGTTAAGCTTCGCCAGAAGCAAGCAAGATGAGGAAGCGAAGCTTCGTAGA
CAAGGCTCGTTCCGTGCTTGACTTACGAGCTCGTGTAGTAAGGCCTCGCCCTACTTCAATAAGGGCTTATGCACTCCACTCGTAAACGAGCGTTAGAGCG
AAGCCTTCCTGGAGCTTCCCCCTTCCCGAACCCTACAATTTCATTTCCGCTGAAGCTTCCCCGGTTTGGAGGATGAATTGATTGGATACCCGAGAACCAT
AATCTTTCAAAGGAACAGCTTCTACGACGATAG