Detailed information on CNT30228106


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019944Ananas comosusCitrullus lanatus101.1531.0680.59438forward
CNT30193656Ananas comosusSecale cereale105.0846.0587.03455reverse complement
CNT30592668Ananas comosusMusa acuminata24.023.2395.19104reverse complement
CNT30624631Ananas comosusDaucus carota13.6328.7893.2259forward
CNT30596067Ananas comosusOryza meridionalis16.6323.5390.2872forward
CNT30358448Ananas comosusLactuca sativa21.9447.2691.5895reverse complement
CNT30574570Ananas comosusVitis vinifera107.8539.3181.8467reverse complement
CNT30104690Ananas comosusOryza rufipogon68.3623.8384.12296reverse complement

Expression of CNT30228106

Peptides detected in this lncRNA

>peptide 1 (32 aa)
IVVEAVPLKDYGSRVSNQFILQTGEASAEMKL*

>peptide 2 (58 aa)
YRRRSCSFERLWFSGIQSIHPPNRGSFSGNEIVGFGKGEAPGRLRSNARLRVECISPY*

Sequence

>CNT30228106
CTATCGTCGTAGAAGCTGTTCCTTTGAAAGATTATGGTTCTCGGGTATCCAATCAATTCATCCTCCAAACCGGGGAAGCTTCAGCGGAAATGAAATTGTA
GGGTTCGGGAAGGGGGAAGCTCCAGGAAGGCTTCGCTCTAACGCTCGTTTACGAGTGGAGTGCATAAGCCCTTATTGAAGTAGGGCGAGGCCTTACTACA
CGAGCTCGTAAGTCAAGCACGGAACGAGCCTTGTCTACGAAGCTTCGCTTCCTCATCTTGCTTGCTTCTGGCGAAGCTTAACGCACTATAACATAGGCAT
GATGGTATGGTAGGAAGACTCCTTTTAAGGCCGACCACTACAATTGAGCGATAGCGAAGCCAAGCCGTCAAAAGGCGAGCAGCCCTTATAGCAATAGCAA
ACGGCCTACTTATAGCCCTATTTATCCCCGGCA