Detailed information on CNT30228064


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533443Ananas comosusEucalyptus grandis66.4482.0194.39196reverse complement
CNT30619235Ananas comosusSesamum indicum40.344.8293.28119reverse complement
CNT3098190Ananas comosusSolanum tuberosum20.3411.589560reverse complement
CNT30592641Ananas comosusMusa acuminata1004.3886.78295reverse complement
CNT30723028Ananas comosusTriticum spelta100.6887.195.62297forward
CNT30431658Ananas comosusPapaver somniferum45.428.4494.03134reverse complement

Expression of CNT30228064

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MNRGEPSDDPSKIRGEILSSDDPFTLPRTYTCTECSYGKVNSWVWNQGGCSEKSFLSRPLQGVRTHLRG*

>peptide 2 (66 aa)
MYRMLIRESELLGLEPGGLLREILSFSSTPGGADTPARMTGDGYKNGGEVKSTRRHSGMNVDPSGRD

Sequence

>CNT30228064
ATGAACCGCGGCGAACCCTCAGACGACCCATCTAAGATTAGGGGGGAGATCCTCAGTAGTGATGACCCTTTTACTCTTCCACGGACTTATACATGTACCG
AATGCTCATACGGGAAAGTGAACTCCTGGGTCTGGAACCAGGGGGGTTGCTCCGAGAAATCCTTTCTTTCTCGTCCACTCCAGGGGGTGCGGACACACCT
GCGCGGATGACAGGTGACGGTTACAAGAATGGCGGGGAAGTGAAGAGTACCCGACGACATTCAGGGATGAATGTAGACCCATCGGGCAGGGATAC