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Detailed information on CNT30228020


BLAST search results

BLAST vs Swiss-Prot:
sp|A6MMN9|RPOA_DIOEL, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Ananas comosusOryza sativa51.1216.9188.12707forward
CNT30550215Ananas comosusIpomoea triloba28.498.686.04394forward
CNT30618863Ananas comosusSesamum indicum22.786.786.03315forward
CNT30201891Ananas comosusPisum sativum9.8362.6782.35136forward
CNT30493471Ananas comosusOlea europaea10.6337.484.35147forward
CNT30560633Ananas comosusActinidia chinensis11.1430.3787.66154forward
CNT30591703Ananas comosusMusa acuminata17.7227.995.51245forward
CNT30511668Ananas comosusSolanum lycopersicum14.6167.1186.14202forward
CNT30555953Ananas comosusOryza glaberrima7.4525.4388.35103forward
CNT3076567Ananas comosusBrassica juncea17.2865.8488.28239forward
CNT3068454Ananas comosusLeersia perrieri34.2777.0788.61474forward
CNT30202977Ananas comosusHelianthus annuus19.1650.1986.79265forward
CNT30689031Ananas comosusTriticum urartu44.5411.0588.96616forward
CNT3059025Ananas comosusAmborella trichopoda50.7658.2687.04702forward
CNT30330242Ananas comosusDioscorea rotundata12.5868.593.1174forward
CNT30585636Ananas comosusEchinochloa crusgalli23.215.5989.72321forward

Expression of CNT30228020

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MNTMIRISNRHGYSIYRITYILRVIYGFHTISAISLDL*

>peptide 2 (43 aa)
MGSIRYPRSLLICNPIHKSIGSVRLAICCVVSTISTEGGEMIS*

>peptide 3 (63 aa)
MNSIYRCGLSSIRCSSSCAFESRSTSRGPRNYPTSYICNSYNGIVETRLNMNNAFWYSTPILT*

Sequence

>CNT30228020
AGTGTCCAATATTTGTTTTACATCTTCCATGCGAAAATATTCAATTCTCATAAGATCTTCTTGACTGTTACTCAAAAGGTCCAATAATGTATGTATATTG
GACCTTTTGAGACAATTATAGGTCCTGGAAGGCAATTCTAATTGGTCAATAAAAATACAATTCAATGGAATTCCTTTTTTGTTTTTCTTTAGATTAGTTA
ATCTATCTTGAAAGGTTAAAAAGGGTAGAGTAAACCTGTTTTTATTTTCTTCGAAATTAATGTCCTCTTCCTCCGCATGTAGAAAAGGAATAAATAAATC
AATCAAATTACGAGAAGCCTCATAAAGTGCTTCCTTAGGAGTTAAACTTCCATTTGTCCATATTTCTAGAAAAAGTATCTCTTGTTTTTCATTCCCATTC
CCATAAGAATGAATACTATGATTCGCATTTCGAACAGGCATGGATACAGCATCTATAGGATAACTTACATCTTGAGAGTCATTTATGGGTTCCATACGAT
ATCCGCGATCTCTCTTGATTTGTAATCCAATACACAAATCAATTGGTTCCGTCAGGTTAGCTATATGTTGTGTCGTGTCAACTATTTCTACGGAAGGTGG
TGAGATGATATCTTGAGCGGTTACGTATCTAGGACCCCTTACGCAAATCAACGCGTCTCTAACTCCATAGAGATTACTTCTCAATACAATTTCTTTCAAA
TTTAGTAAGATTTCATGTACTGATTCCTCAATACCTACTATCGTAGAATATTCATGTGGCACCTTCTCAGATTTTGCACGTGTGATACATGTTCCTTCTA
TTTCTCCAAGTAAAGCCCTTCGCATGGCAATACCGATGGTATCAGCTTGACCTTTCATAAGTGGTGACAGAATGAAACGACCATAATAAAGACGCTTACT
GTCTACTCTTGATTCAACACACTTCCACTGTAGTGTTCGAGTGTATCCCGCTACTTCCTCTCGAACCATAACACGTCTTTTTTTAGGAGGTCGACATCCA
TTATGTGGCATAGGTGTTATATCACGTACGAAACTTAATAATATACCACTTCTACGAATGGCTCGTAATGCTGCATCTCTTCCGAGACCAGGACCCTTTA
TCATAACTTCTGCTCGTTGCATACCCTGATCAACCGCTGTATGAATAGCATTTACCGCTGCGGCTTGAGCAGCATAAGGTGTTCCTCTTCTTGTGCCTTT
GAATCCAGAAGTACCAGCAGAGGCCCAAGAAACTACCCGACCTCGTACATCTGTAACAGTTATAATGGTATTGTTGAAACTCGCTTGAACATGAATAACG
CCTTTTGGTATTCTACGCCCATTCTTACGTGAACCAATACGCCCATTCCTATGTGAACCAATTCTTGGTATAGCTTTTGTCAT