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Detailed information on CNT3022800


BLAST search results

BLAST vs Swiss-Prot:
sp|Q06GZ6|YCF3_DRIGR, E-value = 7e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Populus trichocarpaOryza sativa1006.1187.65340forward
CNT30529029Populus trichocarpaEucalyptus grandis65.2910.8491.44222forward
CNT30618958Populus trichocarpaSesamum indicum1006.190340forward
CNT3020650Populus trichocarpaCitrullus lanatus10019.5492.65340forward
CNT30730408Populus trichocarpaCorchorus capsularis10071.8892.65340forward
CNT30632355Populus trichocarpaVigna unguiculata65.2925.5892.34222forward
CNT30201085Populus trichocarpaPisum sativum10016.8390.29340forward
CNT3047566Populus trichocarpaPrunus dulcis65.2911.5193.69222forward
CNT30194121Populus trichocarpaSecale cereale96.4736.6590.85328forward
CNT30390237Populus trichocarpaTriticum turgidum65.2910.2791.44222forward
CNT30589320Populus trichocarpaMusa acuminata38.5326.9590.84131forward
CNT30237795Populus trichocarpaBrassica oleracea65.295.7993.69222forward
CNT30510815Populus trichocarpaSolanum lycopersicum65.2946.5490.99222forward
CNT30556045Populus trichocarpaOryza glaberrima10010.4287.65340forward
CNT30171250Populus trichocarpaTrifolium pratense29.7127.6792.08101forward
CNT30598583Populus trichocarpaFraxinus excelsior72.0624.686.53245forward
CNT30445979Populus trichocarpaSaccharum spontaneum10086.5190.88340forward
CNT3017916Populus trichocarpaZea mays10016.4990.59340forward
CNT30232528Populus trichocarpaAnanas comosus10017.1892.06340forward
CNT30217417Populus trichocarpaKalanchoe fedtschenkoi10072.6590340forward
CNT30655373Populus trichocarpaRosa chinensis1008.1292.06340forward
CNT30627898Populus trichocarpaDaucus carota10011.0592.94340forward
CNT30595954Populus trichocarpaOryza meridionalis96.4724.9887.8328forward
CNT30430934Populus trichocarpaPapaver somniferum100.885.2590.09343forward
CNT3057361Populus trichocarpaAmborella trichopoda65.294.4189.64222forward
CNT30332506Populus trichocarpaDioscorea rotundata10037.3284.12340forward
CNT30149145Populus trichocarpaBrachypodium distachyon10018.9390340forward
CNT30103542Populus trichocarpaOryza rufipogon10047.9590.59340forward
CNT30604206Populus trichocarpaOryza punctata48.5341.4689.7165forward
CNT30114189Populus trichocarpaFicus carica1008.6388.53340forward

Expression of CNT3022800

Peptides detected in this lncRNA

>peptide 1 (39 aa)
PILRFNIISRSKRYSLFPILRGFVGPSLRNFRISLPNGL*

Sequence

>CNT3022800
AACCAATTCTGCGCTTCAATATAATTTCCAGGAGTAAGCGCTATAGCTTGTTTCCAATACTCCGCGGCTTTGTCGGACCAAGCCTCCGCAATTTCAGAAT
CTCCCTGCCGAATGGCTTATAGTCGCACGTAATGACAGATTACGGCCATATTATTAAAAGCTTGTGGTAAGAAAGGGTTTCGTTCTAATGCCCGAAAATA
ATATTCCAAAGCTTTTGTGTGTTCTCCATTACTTGTGTGAATAAGGCCTATATTATAGAGTATATAACTTCTATCATAGGGATCGATTTCTAGTCGCATA
GCTTCATAATAATTCTGTAAAGCTTCCGCATAATTTCCTT