Detailed information on CNT30228


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677977Zea maysSetaria viridis26.5737.7693.97199forward
CNT30403515Zea maysBeta vulgaris26.8478.2185.07201forward
CNT30220716Zea maysHordeum vulgare18.2960.0989.78137forward
CNT30136247Zea maysLolium perenne20.0349.0290.67150forward
CNT3041150Zea maysChlamydomonas reinhardtii27.6445.3983.09207forward
CNT30624589Zea maysDaucus carota14.1521.3786.79106forward
CNT30689749Zea maysTriticum urartu23.134.9590.17173forward
CNT30721658Zea maysTriticum spelta25.7746.5191.19193forward
CNT30597159Zea maysOryza meridionalis26.327.2190.36197forward

Expression of CNT30228

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MLRHQQTSLVLVTLVAILALIELSTDLLVVLLERRQILTGLRELALLHTLTDIPVHEGTLGVHEVETWGDGYTVKPSLDFLP*

Sequence

>CNT30228
GAACATATATATAGCTAGAGATCGTACTATCTTCTGCAATGTGATATAAAGCATCAAACAATCCATACTACTCAATACTCATGACAAGACGCAAGAAAAT
CATCCGCCGACTCGATTTTACTGATGACAAAAGATGAACAAGGTGGTAAATGTAAAGCATCTCCGAGATGAAGCAACAACGTAAACAGCCATAATTATTC
TCAATAACCCGGTAGCAATGCAGGGGAATTAACAACTCTTACAACATCAGGTGTTGTAAACCACACAATACTTCAGAACAGACACACATAACACGATAGC
AGGAGCAACTCTCGGCAGATCACGGGATAAGGGCAGCACACTGGCCTGATGCTGCGTCATCAGCAAACTTCTCTAGTACTCGTCACCCTCGTCGCCATCC
TCGCCCTCATCGAACTCAGCACCGACCTCCTCGTAGTCCTTCTCGAGCGCCGCCAGATCCTCACGGGCCTCAGAGAACTCGCCCTCCTCCATACCCTCAC
CGACATACCAGTGCACGAAGGCACGCTTGGCGTACATGAGGTCGAAACTTGGGGGGATGGGTACACAGTGAAACCAAGCTTAGACTTCTTGCCGTAGTCA
ACAGACAGACGCTCCAGGAGGAGGGAACCAAGGCCAGAGCCTGTTCCTCCGCCAACAGCGTTGAAGACGAGGAAGCCCTGGAGACCAGTGCAGTTGTCGG
CAAGCTTCCTGATGCGATCAAGGCACAGGTCAACAATCTCCTTGCCAAC