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Detailed information on CNT30227902


BLAST search results

BLAST vs Swiss-Prot:
sp|P10979|GRPA_MAIZE, E-value = 7e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224351Ananas comosusHordeum vulgare10.1524.9283.7580forward
CNT30684603Ananas comosusTriticum urartu10.1526.4983.7580forward
CNT30558853Ananas comosusPanicum hallii9.2620.3987.6773forward

Expression of CNT30227902

Peptides detected in this lncRNA

>peptide 1 (63 aa)
KRKKKCQTHSQHTHEKDNFENTKKGGNIDQRYNFEEKRCDVLLSIPHNLKFVTEIRENKNLAS*

>peptide 2 (37 aa)
MSDPTTCPPRRPRRSSRSGSSHSSPRSRPASTARWRR*

>peptide 3 (31 aa)
KKKKVSNTFTTYSRKRQFRKHKKRRKHRSTI*

Sequence

>CNT30227902
AAAAGAAAAAAAAAGTGTCAAACACATTCACAACATACTCACGAAAAAGACAATTTCGAAAACACAAAAAAAGGAGGAAACATAGATCAACGATATAATT
TCGAAGAAAAGAGATGTGATGTGCTATTGTCAATCCCACACAATCTTAAATTCGTAACCGAAATACGAGAGAACAAAAACTTAGCGTCTTAAGATCCATC
ACCAAACACATATTGCGATCAAAAATAGAGAACACATGCGAGAACACAAACTGCTTAAATACTAATACCCGAGTAAAGAGGAGAGATGAGCGATCCTACC
ACCTGTCCCCCTCGGAGGCCCCGACGCTCCTCCCGTAGCGGCTCTTCCCATTCATCCCCTCGATCGCGTCCCGCATCGACTGCTCGTTGGCGAAGGTGAC
GAACCCGAACCCCCTCGACCTCCCCGTCTCCCGATCGTTGATGATCTGCACCCCCGATTAGCAAATCTCAACGATCCGATCCGCGATCAACAAGCTCAGA
TCCAGATCTCGTAGTCTCAGATCTCAGATCTCAGATCCACGAGATCTGGATCTCAAATCCACACCAAAATCAAATCGAAACAGGGAAAAGGGATTAGGGA
TCAGGGATCGAACCTTAGACTCCAGGATCTCACCAAAGGGTCGGAACGCCTCCTCGAGGGTGTGGCTATCGGTGGCCCACGCGAGGCCGCCGACGAAGCA
GCGGAACTCCACCTCGGTCGTCGCCATAGAAACCCTAGATCGGACGTACGACAGAGAAGGGAGAATCGGGGAGAGGGGGAGGAGATCC