Detailed information on CNT30227873


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671777Ananas comosusSetaria viridis21.9550.9484.44135forward
CNT30531266Ananas comosusEucalyptus grandis17.5625.5381.48108forward
CNT30546615Ananas comosusIpomoea triloba9.2721.1996.4957forward
CNT3070603Ananas comosusQuercus suber14.4723.4283.1589forward
CNT30221191Ananas comosusHordeum vulgare15.9346.2386.7398forward
CNT30589490Ananas comosusMusa acuminata43.0991.3884.15265forward
CNT30552699Ananas comosusOryza glaberrima16.7526.2187.38103forward
CNT30436604Ananas comosusAegilops tauschii20.6515.888.19127forward
CNT30659451Ananas comosusTriticum dicoccoides18.3731.4885.84113forward
CNT30681461Ananas comosusTriticum urartu19.1927.983.05118forward
CNT30112022Ananas comosusFicus carica13.529.4390.3683forward

Expression of CNT30227873

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPVPVIGIVARCTMNTANPIGSGCCRGAS*

>peptide 2 (29 aa)
EFSHSSHTYNTAAFGQHGIRASTTKKKKG*

>peptide 3 (31 aa)
NFHIRHIHIIPPLLDNMVSELARPKKKKVRK*

>peptide 4 (97 aa)
MMPFTMPTPQIAPRHCATMYSTARTSDTFLARNSPNVTAGFICPPACMRAYVKYSSKNIEKCKFFLKNLNLDNTVKFKSKIKNFLTCYSPRGARLEM*

Sequence

>CNT30227873
GAATTTTCACATTCGTCACATACATATAATACCGCCGCTTTTGGACAACATGGTATCAGAGCTAGCACGACCAAAAAAAAAAAAGGTTAGGAAATGAAGA
GAGTGATGATACCTGGTCATCCCAGGCCTTTTTCTGGTTGTAGATAACTGCAGCCCCCAAGCTCCTAGCCGGGTTAATGCCGGTGCCGGTGATCGGAATC
GTGGCGAGGTGCACCATGAACACCGCGAACCCGATCGGAAGCGGCTGTTGTAGGGGTGCTTCATGATGCCCTTCACGATGCCGACGCCGCAGATCGCTCC
CAGGCACTGCGCCACTATGTACAGCACCGCCCGCACCAGCGACACTTTTCTCGCCAGAAACAGCCCGAACGTCACCGCCGGATTTATATGCCCCCCTGCA
TGCATGCGTGCATATGTAAAATATTCTTCCAAAAATATTGAAAAATGTAAATTTTTTTTAAAAAATTTAAATTTAGATAACACTGTAAAATTTAAAAGTA
AAATTAAAAATTTTTTAACATGCTACTCGCCTCGCGGCGCTCGACTAGAAATGTGAAATAATTAAGTTTCGAATTTAAAATCTCAAAATCAAATGGTTAC
CAACCATTGTTCCNT