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Detailed information on CNT30227661


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549116Ananas comosusIpomoea triloba22.8118.3188.4652forward
CNT30404919Ananas comosusBeta vulgaris39.0414.2286.5289forward
CNT30525480Ananas comosusPhaseolus vulgaris50.445.3883.48115forward
CNT30502187Ananas comosusNicotiana attenuata50.443.1686.09115forward
CNT30711465Ananas comosusGlycine max50.4424.6383.48115forward
CNT3044720Ananas comosusPrunus dulcis62.2821.5585.21142forward
CNT30163276Ananas comosusPistacia vera53.5139.6186.89122forward
CNT3085478Ananas comosusVigna radiata35.5314.1683.9581forward
CNT3061285Ananas comosusArabidopsis lyrata28.959.0890.9166forward
CNT30613102Ananas comosusArabis alpina32.4628.4686.4974forward
CNT30646773Ananas comosusRosa chinensis22.8114.0996.1552forward
CNT30213185Ananas comosusHelianthus annuus36.415.0185.5483forward
CNT30595656Ananas comosusOryza meridionalis36.8425.1591.6784forward
CNT30704968Ananas comosusPrunus avium46.0511.6488.57105forward
CNT30644102Ananas comosusCannabis sativa21.0511.0389.5848forward
CNT30118191Ananas comosusCitrus clementina45.189.9192.23103forward
CNT30102464Ananas comosusOryza rufipogon50.444.5382.61115forward
CNT30604398Ananas comosusOryza punctata50.444.8681.74115forward

Expression of CNT30227661

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MMAAPRLLAGLMPVPVMGMVARWTRKTAKPMGRGANDLSAKPIALGVTRGHNIGPSSIAHVEPLLEP

>peptide 2 (44 aa)
IPSMFPVVDDGSSKAPSRVDASASDGDGGQVDQEDSKANGQRCQ*

Sequence

>CNT30227661
ATCCCAAGCATGTTCCCTGTTGTAGATGATGGCAGCTCCAAGGCTCCTAGCAGGGTTGATGCCAGTGCCAGTGATGGGGATGGTGGCCAGGTGGACCAGG
AAGACAGCAAAGCCAATGGGCAGAGGTGCCAATGATCTCAGCGCCAAGCCCATCGCCCTTGGTGTAACCAGGGGCCACAACATTGGCCCCTCCTCCATTG
CCCATGTAGAGCCCCTTTTGGAACCCCT