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Detailed information on CNT30227528


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675663Ananas comosusSetaria viridis17.3327.188.1126forward
CNT30282434Ananas comosusChenopodium quinoa25.177.4585.25183forward
CNT30379122Ananas comosusManihot esculenta19.6732.6588.81143forward
CNT30402836Ananas comosusBeta vulgaris21.3216.0588.39155forward
CNT30631186Ananas comosusVigna unguiculata28.7518.4586.6209forward
CNT30712266Ananas comosusGlycine max13.4835.7790.8298forward
CNT30635894Ananas comosusCapsicum annuum30.6739.6187.44223forward
CNT30187559Ananas comosusSecale cereale30.433.1387.33221forward
CNT30298345Ananas comosusTriticum aestivum21.4622.1689.74156forward
CNT30394033Ananas comosusTriticum turgidum21.4611.5389.74156forward
CNT30560520Ananas comosusActinidia chinensis14.0332.1886.27102forward
CNT30510308Ananas comosusSolanum lycopersicum22.5663.5789.63164forward
CNT30441217Ananas comosusAegilops tauschii33.2932.5785.95242forward
CNT30250974Ananas comosusAvena sativa36.5961.8685.71266forward
CNT30314068Ananas comosusCamelina sativa34.1116.3682.26248forward
CNT304322Ananas comosusZea mays24.6231.3588.27179forward
CNT30625469Ananas comosusDaucus carota30.1214.6484.47219forward
CNT30352420Ananas comosusEragrostis tef35.3541.5286.38257forward
CNT30362217Ananas comosusSorghum bicolor16.5122.9487.5120forward
CNT30704690Ananas comosusPrunus avium35.3512.6587.94257forward
CNT3055965Ananas comosusAmborella trichopoda21.3217.8485.16155forward
CNT30107297Ananas comosusOryza longistaminata21.3234.5287.74155forward
CNT30323609Ananas comosusAsparagus officinalis34.5315.0889.64251forward
CNT30149846Ananas comosusBrachypodium distachyon24.3539.9589.27177forward
CNT30103353Ananas comosusOryza rufipogon34.532586.45251forward
CNT30577638Ananas comosusOryza barthii34.5338.7386.85251forward
CNT30584451Ananas comosusEchinochloa crusgalli17.1923.3285.6125forward

Expression of CNT30227528

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MMGFSGLISIVFLLDMYPAMLESLSACAFMILSMLAVHPYSPVTKQHGESTTRSDT

Sequence

>CNT30227528
GCTGCAGTGGCTGCCATGGATCACTTTGCAGCAGCACAAGCAAACCCAATAAGAGCAACAAAAAAGCAACGCCAGTGAAGATCTAGCAGGAATGTAGGAC
ATCCATTTAAGTAACACGAGAGTATGGAAGCATAGTAGAGAAACCACCAACTAAACTCACTCTTAAGGAACATAGTGTCTAAGCACATTCAAACAAAACA
ATAGACAGCGAGGCCCCTATTGCAGGCTAAAGCGAAGCTGACCTCATCCAACATAGATATGTAAAACTAAAGATCCAAAATCGTCACATCTAAGATAACA
AGTCATTAAAATTTAGAACTGACTATTAGGCAATAAAGTAAAGCAGTAGATTCTTAGTCAACTTCCTCCATCTTGCTCTCCCCAGCATCATCCTCCAGGG
GGGGCATGTCGGTGTCCTCATTGGCCACCTCTTCCTCATCAATGCTGAGACCCAACTTCAGCATGCGGTAAGGAGGGCAGTCTCGAACAGCAGCATCACA
AGGTCTTTCACCGACTTGTCATTCTTGTCAGCATCAGCCCTCTTCCTCAGCTCCTCCATGATGGGGTTCTCCGGGTTGATCTCCATAGTCTTCTTGCTTG
ACATGTACCCAGCCATGCTCGAGTCCCTCAGCGCCTGCGCCTTCATGATCCTCTCCATGTTGGCCGTCCACCCGTACTCCCCAGTCACCAAGCAGCATGG
AGAGTCGACTACACGATCAGACACCAC