Detailed information on CNT30227123


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 2e-94

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709956Hordeum vulgareGlycine max39.6833.4196150forward
CNT30554621Hordeum vulgareOryza glaberrima55.0396.7499.52208forward
CNT3068134Hordeum vulgareLeersia perrieri78.0481.4993.9295reverse complement
CNT30126841Hordeum vulgareCorymbia citriodora74.8776.0894.35283forward
CNT30370808Hordeum vulgareOryza glumipatula55.0395.85100208forward
CNT30574740Hordeum vulgareOryza barthii75.9358.3399.3287forward
CNT30603500Hordeum vulgareOryza punctata60.5889.1194.32229forward

Expression of CNT30227123

Peptides detected in this lncRNA

>peptide 1 (31 aa)
CRPKNNRGQGRPVRRWGISFIVERETARITS*

>peptide 2 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

>peptide 3 (50 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGRRSGSENVGLSNENIGIT

>peptide 4 (48 aa)
MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

Sequence

>CNT30227123
GATGTAGACCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGG
CCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCA
CTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAG
GGAAGCAACCGCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTATCACA