Detailed information on CNT30226937


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 7e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673835Hordeum vulgareSetaria viridis34.573297.32112forward
CNT30547549Hordeum vulgareIpomoea triloba22.539.4384.9373forward
CNT30329187Hordeum vulgareDioscorea rotundata29.3224.4884.2195forward

Expression of CNT30226937

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRRASWMSLGMMVTRLAWMAHRLVSSNSPTRYASA

>peptide 2 (47 aa)
TVSIGLQHRKPKPLKQKSLCNYGNQPTRVSTTNHKTHIWTRKANQLH*

>peptide 3 (56 aa)
MLANGVIAPECSALGGLGALPADAAGELDVLGHDGDALGVDGAQVGVLEQPHEVRLR

Sequence

>CNT30226937
TCACAGTAAGCATCGGTTTGCAACACCGCAAACCAAAACCACTTAAGCAGAAAAGTCTCTGTAACTACGGGAACCAACCAACCAGGGTTTCTACAACGAA
CCACAAGACGCATATCTGGACAAGGAAAGCCAATCAACTACACTAATACTAATGCTGGCGAACGGTGTCATCGCTCCCGAATGCAGCGCTCTGGGTGGCT
TAGGCGCGCTCCCCGCGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACA
GCCCCACGAGGTACGCCTCCGCCG