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Detailed information on CNT30226738


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XPT0|ATPI_WHEAT, E-value = 1e-65

BLAST vs NONCODE:
NONMEST003533, E-value = 3e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317837Hordeum vulgareCorylus avellana19.7124.4389.49257forward
CNT3021394Hordeum vulgareCitrullus lanatus23.7749.4489.68310forward
CNT30198301Hordeum vulgarePisum sativum23.7714.9186.77310forward
CNT30505351Hordeum vulgareNicotiana attenuata23.778.9288.06310forward
CNT30291829Hordeum vulgareTriticum aestivum26.238.6899.12342forward
CNT30387575Hordeum vulgareTriticum turgidum21.413.1784.95279forward
CNT30541450Hordeum vulgareBrassica napus23.7711.0385.48310forward
CNT30238613Hordeum vulgareBrassica oleracea8.922.3584.48116forward
CNT30511101Hordeum vulgareSolanum lycopersicum23.7725.3982.9310forward
CNT30172770Hordeum vulgareTrifolium pratense16.8743.1487.73220forward
CNT30659105Hordeum vulgareTriticum dicoccoides15.1848.0688.38198forward
CNT3017990Hordeum vulgareZea mays26.2310.3496.49342forward
CNT30232563Hordeum vulgareAnanas comosus26.239.9892.69342forward
CNT3057337Hordeum vulgareAmborella trichopoda23.248.1384.49303forward
CNT30726491Hordeum vulgareLupinus angustifolius23.8526.787.46311forward

Expression of CNT30226738

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MLARDSTTAAAAERRWSSRPRASYCTSTNILVFYISSDQTGCEVQEFKGRHTYAQIVVAMCVGERDRKKNDTASTSRITICICVLLYVS*

>peptide 2 (60 aa)
MVEHSNNLFLLNALFFNIMVVPAFTNKKCCHISMSPLVKNQEVQIRCCSLFLSLGVQVLL*

>peptide 3 (45 aa)
MGISILHFNPAIVLWYSKKDMLSVYTLLFSIHVALVGILVSCVNW*

>peptide 4 (30 aa)
LAVGSSKGFANQIRLYSMDLIHGSRLCRIK*

Sequence

>CNT30226738
CTTAGCAGTTGGTAGTTCAAAAGGTTTCGCAAATCAAATTAGACTGTACTCTATGGATTTGATACATGGAAGTCGATTATGTAGAATCAAATAATTTTGA
AATTCCTTTTGATCCTGTTAATTTGATGTAGAGGGTACACCTCTTGCAGCAGACTTCGTCGTCTCATCGGCATGCTCGCCCGCGACAGTACAACTGCTGC
AGCTGCGGAGAGACGCTGGAGCTCACGGCCGCGTGCCTCGTACTGTACCTCAACTAACATATTGGTCTTCTACATATCTTCTGATCAAACTGGCTGTGAG
GTCCAGGAATTCAAGGGCCGCCACACATATGCACAAATCGTAGTGGCAATGTGTGTAGGGGAACGCGACAGAAAAAAAAACGATACTGCGAGCACGTCCA
GGATCACTATTTGTATCTGTGTGTTACTGTATGTAAGCTAAAGAGCAATTTATTGGGAGATAAACAACATTTTGAGGCCCTACCTTGTCAGATGGGCATT
TCCATTCTCCATTTCAATCCTGCCATTGTACTGTGGTACTCCAAGAAGGATATGCTCAGTGTGTACACCCTTTTATTTAGTATTCATGTAGCCTTGGTTG
GTATTCTTGTCTCCTGTGTTAATTGGTAAAAGGATTGGGGTTGGTTTAATATATTTCTCGAAATAGCTCAATCCTTTTTTGCTAAGACCAGCATAAAAAT
ATGCCGCTGACGTGAGTAAAGCTAAAGCAACAGTAGTATTTATATCATTCGTGGGCGCTGCTAATTCCCCATGGGGTAACTCTATAATTTTCCAAGGTAA
AAGAGCACCCGACCAATTTGAAACAAAAATAAAAAGGAACATAGTTCCAATAAAGGGAACCCAGGGACCATATTCTTCTCCAATCTGAGTTTTGCTCAAG
TCTCGAATAAACTCAAGGACATATTCAAAAAAATTCTGCCCGTCGGTCGGGATGGTTTTGGTTTGTTAATTAACTAGGCTTTCTCTTTGGTCACACAAAT
ATCCAGACATCCATGTAGCATTATCTTGCGAAACAAGGAATTTATATTTTCTCTGTTTACCGCTTACTGTCATATACAATAATTTTATGGATGTGAATGG
TTGAACACTCTAATAATCTATTTTTGTTAAATGCACTTTTTTTTAATATAATGGTTGTTCCTGCTTTTACTAATAAAAAATGTTGTCATATATCAATGTC
TCCTTTAGTCAAGAATCAGGAAGTACAAATTAGGTGTTGTTCTCTTTTTCTGTCTTTGGGAGTGCAAGTCCTTCTTTAGATGCTTCCATTCTAACCTCTT
TCTG