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Detailed information on CNT30226711


BLAST search results

BLAST vs Swiss-Prot:
sp|P12862|ATPAM_WHEAT, E-value = 6e-121

BLAST vs NONCODE:
NONORUT004354, E-value = 2e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533086Hordeum vulgareEucalyptus grandis22.0212.0386.57201forward
CNT30193721Hordeum vulgareSecale cereale31.9810097.6292forward
CNT30689542Hordeum vulgareTriticum urartu99.7855.1197.69911forward

Expression of CNT30226711

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MWTTNFIHIITICKACHIFKKMSCGLKIIRYRYR*

>peptide 2 (34 aa)
MPESQHQGLTQIERRRPLRDIVPIPVLNYRRLVS*

>peptide 3 (33 aa)
MAQKSICNNYLKKVKNSLLGFSWREKPSSYICE*

Sequence

>CNT30226711
CCATAATTTTCTAATATTGGGTTATGTGGACCACTAATTTTATACATATTATCACAATTTGCAAGGCTTGTCACATATTCAAGAAAATGAGCTGTGGATT
GAAAATCATCAGGTATAGGTATAGGTAGGGGGTCCGTCAACCCTTGTGGGGCTGGGTGGGGTATCCTGAACTACTGGAGCAGCTCCCCCTTGTGGCTGGG
GTAGACTCTCAGCAGCTTGGTTTACGCATGGCACAAAAATCTATCTGTAATAATTATTTGAAAAAAGTCAAAAATAGCCTATTGGGGTTCAGTTGGCGAG
AAAAGCCTTCTTCCTACATCTGCGAGTAAGGGGCAACCTTTTTGATTAATTCACAGGTAAGGCAAAGTGCTTTCTTTTAAAGAAGCATCTGGTTCCATCT
TTCTTTCGTTAGTTAAGCCACCTTTTTCTAAGAAGGATTTTTGTAATTCTGGATTAATAGTACTTAGAATGGCTTTTTCATATTGAGAAATTCTGTCTAG
TGGCATTCGATCACAGAAGCCGTTGACAGCAGCATAAATCACAACAATTTGTTTTTCAATTGGAAGTGGTTCATATTGTGGTTGTTTGGGCACTTCTGTA
AGCCTTGCACCTCTATTGAGTAATGCCTGAGTCGCAGCATCAAGGTCTGACCCAAATTGAGCGAAGGCGGCCACTTCGCGATATTGTGCCAATTCCAGTT
TTGAACTACCGCAGACTTGTTTCATAGCTTTCAACTGAGCGGCAGACCCGACACGACTGACGGATAAGCCAACGTTAATAGCTGGTCTAATTCCGTGATA
AAAGAGCTCTGTTTCCAAACAGATTTGTCCATCTGTAATGGAGATCACATTGGTGGGGATATAGGCCGATACGTCTCCAGCTTGTGTTTCAATCACGGGT
AACGCAGTCGAAG